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Mutant Information

Mutant Name	FN3751-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3751-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8858558 T-C Hetero INTRON
SBS Chr1 18855862 C-G Homo INTERGENIC
SBS Chr2 4133397 T-C Hetero INTRON
SBS Chr2 6671878 G-T Hetero INTRON
SBS Chr2 6852743 A-G Hetero INTERGENIC
SBS Chr2 17706463 T-G Hetero INTERGENIC
SBS Chr2 35098114 A-T Homo INTERGENIC
SBS Chr3 5197390 G-A Homo INTERGENIC
SBS Chr3 21822714 C-T Hetero INTERGENIC
SBS Chr4 18843036 G-A Hetero INTERGENIC
SBS Chr4 21167502 T-A Hetero INTERGENIC
SBS Chr6 8822244 C-T Homo INTERGENIC
SBS Chr6 15794807 G-A Hetero INTERGENIC
SBS Chr6 16756171 G-C Homo INTERGENIC
SBS Chr6 22356621 A-C Homo INTERGENIC
SBS Chr6 22386740 T-A Homo INTERGENIC
SBS Chr7 11829901 C-T Homo INTERGENIC
SBS Chr8 1151465 A-G Homo INTERGENIC
SBS Chr8 14880948 A-T Homo INTERGENIC
SBS Chr8 15280808 G-A Hetero INTERGENIC
SBS Chr9 22504147 C-T Hetero INTERGENIC
SBS Chr9 22504149 T-C Hetero INTERGENIC
SBS Chr10 6150641 C-A Hetero INTERGENIC
SBS Chr10 6207540 G-A Hetero INTERGENIC
SBS Chr10 11222870 A-G Hetero INTERGENIC
SBS Chr11 6499383 C-T Hetero INTERGENIC
SBS Chr11 9148922 T-C Hetero INTERGENIC
SBS Chr11 16530973 C-T Homo INTERGENIC
SBS Chr11 18344250 C-T Homo INTERGENIC
SBS Chr11 26556148 A-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 3165001 3172000 6999 OsKitaake07g039500
Deletion Chr1 4434897 4434903 6
Deletion Chr8 7331131 7331140 9
Deletion Chr4 9333920 9333946 26
Deletion Chr3 10972954 10972956 2
Deletion Chr5 16727500 16727502 2
Deletion Chr7 19451499 19451522 23
Deletion Chr8 21356935 21356939 4
Deletion Chr1 21437361 21437362 1
Deletion Chr6 24952001 24971000 18999
Deletion Chr7 25991001 26005000 13999 2
Deletion Chr6 27280994 27281005 11
Deletion Chr1 28666152 28666154 2
Deletion Chr6 29361177 29361178 1
Deletion Chr2 35046493 35046497 4
Deletion Chr2 35666454 35666455 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 3658605 3658608 2
Insertion Chr5 27041416 27041419 2
Insertion Chr6 12911425 12911430 4
Insertion Chr10 11947046 11947049 2
Insertion Chr8 13431372 13431374 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 44092902 44210829 2
Inversion Chr1 44092909 44210844 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8858558	T-C	Hetero	INTRON
SBS	Chr1	18855862	C-G	Homo	INTERGENIC
SBS	Chr2	4133397	T-C	Hetero	INTRON
SBS	Chr2	6671878	G-T	Hetero	INTRON
SBS	Chr2	6852743	A-G	Hetero	INTERGENIC
SBS	Chr2	17706463	T-G	Hetero	INTERGENIC
SBS	Chr2	35098114	A-T	Homo	INTERGENIC
SBS	Chr3	5197390	G-A	Homo	INTERGENIC
SBS	Chr3	21822714	C-T	Hetero	INTERGENIC
SBS	Chr4	18843036	G-A	Hetero	INTERGENIC
SBS	Chr4	21167502	T-A	Hetero	INTERGENIC
SBS	Chr6	8822244	C-T	Homo	INTERGENIC
SBS	Chr6	15794807	G-A	Hetero	INTERGENIC
SBS	Chr6	16756171	G-C	Homo	INTERGENIC
SBS	Chr6	22356621	A-C	Homo	INTERGENIC
SBS	Chr6	22386740	T-A	Homo	INTERGENIC
SBS	Chr7	11829901	C-T	Homo	INTERGENIC
SBS	Chr8	1151465	A-G	Homo	INTERGENIC
SBS	Chr8	14880948	A-T	Homo	INTERGENIC
SBS	Chr8	15280808	G-A	Hetero	INTERGENIC
SBS	Chr9	22504147	C-T	Hetero	INTERGENIC
SBS	Chr9	22504149	T-C	Hetero	INTERGENIC
SBS	Chr10	6150641	C-A	Hetero	INTERGENIC
SBS	Chr10	6207540	G-A	Hetero	INTERGENIC
SBS	Chr10	11222870	A-G	Hetero	INTERGENIC
SBS	Chr11	6499383	C-T	Hetero	INTERGENIC
SBS	Chr11	9148922	T-C	Hetero	INTERGENIC
SBS	Chr11	16530973	C-T	Homo	INTERGENIC
SBS	Chr11	18344250	C-T	Homo	INTERGENIC
SBS	Chr11	26556148	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	3165001	3172000	6999	OsKitaake07g039500
Deletion	Chr1	4434897	4434903	6
Deletion	Chr8	7331131	7331140	9
Deletion	Chr4	9333920	9333946	26
Deletion	Chr3	10972954	10972956	2
Deletion	Chr5	16727500	16727502	2
Deletion	Chr7	19451499	19451522	23
Deletion	Chr8	21356935	21356939	4
Deletion	Chr1	21437361	21437362	1
Deletion	Chr6	24952001	24971000	18999
Deletion	Chr7	25991001	26005000	13999	2
Deletion	Chr6	27280994	27281005	11
Deletion	Chr1	28666152	28666154	2
Deletion	Chr6	29361177	29361178	1
Deletion	Chr2	35046493	35046497	4
Deletion	Chr2	35666454	35666455	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	44092902	44210829	2
Inversion	Chr1	44092909	44210844	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes