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| Mutant Information |
|---|
| Mutant Name | FN3752-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3752-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 30925076 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 44026360 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g491000 |
| SBS | Chr2 | 666602 | T-G | Homo | INTRON | |
| SBS | Chr2 | 35539548 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 19769925 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26889574 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 30865063 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 10682790 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g091700 |
| SBS | Chr6 | 6476975 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18013169 | G-A | Homo | INTRON | |
| SBS | Chr7 | 9822585 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 23295743 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9902063 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20157697 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7563369 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 7786702 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8389570 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 21428225 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 19528284 | C-G | Homo | UTR_5_PRIME | |
| SBS | Chr10 | 21156863 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23613763 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 7064794 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 8350241 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g091000 |
| SBS | Chr12 | 54602 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g000600 |
| SBS | Chr12 | 4839330 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 12369091 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16762306 | T-C | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 4274611 | 4274612 | 1 | |
| Deletion | Chr4 | 5212085 | 5212091 | 6 | |
| Deletion | Chr5 | 12541194 | 12541679 | 485 | |
| Deletion | Chr10 | 12686194 | 12686196 | 2 | |
| Deletion | Chr6 | 12713001 | 12915000 | 201999 | 17 |
| Deletion | Chr3 | 14378001 | 14390000 | 11999 | 3 |
| Deletion | Chr4 | 15124518 | 15124525 | 7 | |
| Deletion | Chr6 | 16385513 | 16385519 | 6 | |
| Deletion | Chr9 | 17141437 | 17141447 | 10 | |
| Deletion | Chr4 | 19316554 | 19316559 | 5 | OsKitaake04g098300 |
| Deletion | Chr2 | 21985001 | 22030000 | 44999 | 4 |
| Deletion | Chr2 | 24484563 | 24484564 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 22688053 | 22688057 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 1587883 | 1605713 | |
| Inversion | Chr12 | 18745999 | 19174861 | OsKitaake12g138500 |
| Inversion | Chr6 | 19543259 | 19877015 | OsKitaake06g178400 |
| Inversion | Chr6 | 19544703 | 19868156 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 7386763 | Chr3 | 32664536 | OsKitaake03g345800 |
| Translocation | Chr10 | 8614026 | Chr7 | 13904532 | |
| Translocation | Chr10 | 8661846 | Chr1 | 17287589 | |
| Translocation | Chr8 | 26705615 | Chr2 | 21984603 | 2 |
| Translocation | Chr8 | 26705621 | Chr2 | 21982400 | 2 |