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Mutant Information

Mutant Name	FN3753-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3753-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1571359 G-T Hetero UTR_3_PRIME
SBS Chr1 20969246 A-C Hetero INTRON
SBS Chr2 7800810 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 21351085 T-A Hetero UTR_5_PRIME
SBS Chr3 22219954 C-T Homo INTERGENIC
SBS Chr4 1507105 C-T Hetero INTERGENIC
SBS Chr4 32769663 A-G Hetero INTERGENIC
SBS Chr5 25340249 T-A Homo INTRON
SBS Chr6 4024395 G-A Hetero INTERGENIC
SBS Chr6 29787437 G-A Homo INTERGENIC
SBS Chr7 8122148 C-G Hetero INTERGENIC
SBS Chr7 12775278 G-A Hetero INTERGENIC
SBS Chr7 15868084 C-A Hetero INTERGENIC
SBS Chr8 7358265 G-C Hetero INTERGENIC
SBS Chr9 13013177 C-T Hetero INTERGENIC
SBS Chr10 4242299 T-A Hetero INTERGENIC
SBS Chr10 4242300 C-A Hetero INTERGENIC
SBS Chr10 8451145 G-A Hetero INTERGENIC
SBS Chr10 18826852 G-A Homo INTERGENIC
SBS Chr10 21434509 T-C Hetero INTERGENIC
SBS Chr11 4378174 C-G Hetero INTERGENIC
SBS Chr11 15951382 A-G Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 457421 457425 4
Deletion Chr2 1683751 1683759 8
Deletion Chr12 5826116 5826117 1
Deletion Chr11 10223545 10223547 2
Deletion Chr12 10925006 10925016 10
Deletion Chr12 11652227 11652538 311
Deletion Chr12 11715414 11715569 155
Deletion Chr8 12432755 12432761 6
Deletion Chr2 13188134 13188136 2
Deletion Chr6 13534202 13534206 4
Deletion Chr5 13888347 13888357 10
Deletion Chr5 16055565 16055566 1
Deletion Chr2 16872679 16872681 2
Deletion Chr1 17094287 17094288 1
Deletion Chr3 20090685 20090688 3
Deletion Chr3 22245505 22245517 12
Deletion Chr7 23957228 23957232 4
Deletion Chr6 26366032 26366033 1
Deletion Chr11 29570001 29739000 168999 24
Deletion Chr1 43832704 43832711 7

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 9861134 9861137 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 16677139 17262008 OsKitaake02g173800

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 4556311 Chr4 25566046 OsKitaake04g176500
Translocation Chr12 4556326 Chr4 25566669 OsKitaake04g176500
Translocation Chr11 29569119 Chr3 33222344 OsKitaake11g243600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1571359	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	20969246	A-C	Hetero	INTRON
SBS	Chr2	7800810	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	21351085	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	22219954	C-T	Homo	INTERGENIC
SBS	Chr4	1507105	C-T	Hetero	INTERGENIC
SBS	Chr4	32769663	A-G	Hetero	INTERGENIC
SBS	Chr5	25340249	T-A	Homo	INTRON
SBS	Chr6	4024395	G-A	Hetero	INTERGENIC
SBS	Chr6	29787437	G-A	Homo	INTERGENIC
SBS	Chr7	8122148	C-G	Hetero	INTERGENIC
SBS	Chr7	12775278	G-A	Hetero	INTERGENIC
SBS	Chr7	15868084	C-A	Hetero	INTERGENIC
SBS	Chr8	7358265	G-C	Hetero	INTERGENIC
SBS	Chr9	13013177	C-T	Hetero	INTERGENIC
SBS	Chr10	4242299	T-A	Hetero	INTERGENIC
SBS	Chr10	4242300	C-A	Hetero	INTERGENIC
SBS	Chr10	8451145	G-A	Hetero	INTERGENIC
SBS	Chr10	18826852	G-A	Homo	INTERGENIC
SBS	Chr10	21434509	T-C	Hetero	INTERGENIC
SBS	Chr11	4378174	C-G	Hetero	INTERGENIC
SBS	Chr11	15951382	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	457421	457425	4
Deletion	Chr2	1683751	1683759	8
Deletion	Chr12	5826116	5826117	1
Deletion	Chr11	10223545	10223547	2
Deletion	Chr12	10925006	10925016	10
Deletion	Chr12	11652227	11652538	311
Deletion	Chr12	11715414	11715569	155
Deletion	Chr8	12432755	12432761	6
Deletion	Chr2	13188134	13188136	2
Deletion	Chr6	13534202	13534206	4
Deletion	Chr5	13888347	13888357	10
Deletion	Chr5	16055565	16055566	1
Deletion	Chr2	16872679	16872681	2
Deletion	Chr1	17094287	17094288	1
Deletion	Chr3	20090685	20090688	3
Deletion	Chr3	22245505	22245517	12
Deletion	Chr7	23957228	23957232	4
Deletion	Chr6	26366032	26366033	1
Deletion	Chr11	29570001	29739000	168999	24
Deletion	Chr1	43832704	43832711	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	16677139	17262008	OsKitaake02g173800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes