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Mutant Information

Mutant Name	FN3756-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3756-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14119301 C-T Hetero INTERGENIC
SBS Chr1 16814665 A-T Hetero INTRON
SBS Chr1 18463972 A-T Hetero INTERGENIC
SBS Chr1 34929157 G-C Hetero INTERGENIC
SBS Chr1 35148830 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 35189712 T-C Hetero INTERGENIC
SBS Chr1 35701952 T-A Hetero INTERGENIC
SBS Chr1 35977007 G-A Hetero INTERGENIC
SBS Chr2 609443 T-A Hetero INTRON
SBS Chr2 6240907 A-T Hetero UTR_3_PRIME
SBS Chr2 6384211 T-A Hetero INTERGENIC
SBS Chr2 6695086 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g091200
SBS Chr3 12225926 C-T Hetero INTERGENIC
SBS Chr4 13394741 G-A Hetero INTERGENIC
SBS Chr5 8119175 C-T Hetero INTERGENIC
SBS Chr5 8119176 G-T Hetero INTERGENIC
SBS Chr5 8119177 C-T Hetero INTERGENIC
SBS Chr5 29082334 C-T Hetero INTERGENIC
SBS Chr6 6801314 C-G Homo INTERGENIC
SBS Chr6 22618503 C-T Hetero INTRON
SBS Chr6 22618505 G-T Hetero INTRON
SBS Chr6 23953336 G-C Hetero INTERGENIC
SBS Chr6 30817868 T-C Hetero INTERGENIC
SBS Chr7 4055488 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g051500
SBS Chr7 9462044 C-T Hetero INTERGENIC
SBS Chr7 20334536 G-A Hetero INTERGENIC
SBS Chr8 1183621 C-G Hetero INTERGENIC
SBS Chr8 18643887 C-T Hetero INTERGENIC
SBS Chr9 112761 C-T Homo INTRON
SBS Chr9 12046777 A-T Hetero INTERGENIC
SBS Chr9 20101215 T-C Hetero UTR_3_PRIME
SBS Chr10 532991 C-T Hetero STOP_GAINED OsKitaake10g003800
SBS Chr10 18910602 C-T Hetero INTERGENIC
SBS Chr11 21561928 G-A Hetero INTERGENIC
SBS Chr11 28059889 G-A Hetero INTERGENIC
SBS Chr12 2132309 G-A Homo INTERGENIC
SBS Chr12 4706614 G-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 867784 868009 225
Deletion Chr12 917349 917351 2
Deletion Chr8 3070615 3070619 4
Deletion Chr4 6877981 6877983 2
Deletion Chr8 13835312 13835315 3
Deletion Chr10 16862001 16949000 86999 16
Deletion Chr8 17474504 17474520 16
Deletion Chr4 19535184 19535193 9
Deletion Chr4 20335098 20335100 2
Deletion Chr12 20728524 20728527 3
Deletion Chr10 21286432 21286438 6
Deletion Chr4 24241617 24241631 14
Deletion Chr3 26539410 26539411 1
Deletion Chr7 29474927 29474930 3
Deletion Chr3 37529087 37529088 1
Deletion Chr1 41481004 41481017 13

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 2516714 2516723 8
Insertion Chr7 4831497 4831500 2
Insertion Chr8 24269613 24269617 3
Insertion Chr9 22422765 22422768 2
Insertion Chr10 452192 452195 2
Insertion Chr3 4089589 4089591 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 23369841 23855242 OsKitaake08g183900
Inversion Chr8 23369857 23855258 OsKitaake08g183900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14119301	C-T	Hetero	INTERGENIC
SBS	Chr1	16814665	A-T	Hetero	INTRON
SBS	Chr1	18463972	A-T	Hetero	INTERGENIC
SBS	Chr1	34929157	G-C	Hetero	INTERGENIC
SBS	Chr1	35148830	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	35189712	T-C	Hetero	INTERGENIC
SBS	Chr1	35701952	T-A	Hetero	INTERGENIC
SBS	Chr1	35977007	G-A	Hetero	INTERGENIC
SBS	Chr2	609443	T-A	Hetero	INTRON
SBS	Chr2	6240907	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	6384211	T-A	Hetero	INTERGENIC
SBS	Chr2	6695086	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g091200
SBS	Chr3	12225926	C-T	Hetero	INTERGENIC
SBS	Chr4	13394741	G-A	Hetero	INTERGENIC
SBS	Chr5	8119175	C-T	Hetero	INTERGENIC
SBS	Chr5	8119176	G-T	Hetero	INTERGENIC
SBS	Chr5	8119177	C-T	Hetero	INTERGENIC
SBS	Chr5	29082334	C-T	Hetero	INTERGENIC
SBS	Chr6	6801314	C-G	Homo	INTERGENIC
SBS	Chr6	22618503	C-T	Hetero	INTRON
SBS	Chr6	22618505	G-T	Hetero	INTRON
SBS	Chr6	23953336	G-C	Hetero	INTERGENIC
SBS	Chr6	30817868	T-C	Hetero	INTERGENIC
SBS	Chr7	4055488	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g051500
SBS	Chr7	9462044	C-T	Hetero	INTERGENIC
SBS	Chr7	20334536	G-A	Hetero	INTERGENIC
SBS	Chr8	1183621	C-G	Hetero	INTERGENIC
SBS	Chr8	18643887	C-T	Hetero	INTERGENIC
SBS	Chr9	112761	C-T	Homo	INTRON
SBS	Chr9	12046777	A-T	Hetero	INTERGENIC
SBS	Chr9	20101215	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	532991	C-T	Hetero	STOP_GAINED	OsKitaake10g003800
SBS	Chr10	18910602	C-T	Hetero	INTERGENIC
SBS	Chr11	21561928	G-A	Hetero	INTERGENIC
SBS	Chr11	28059889	G-A	Hetero	INTERGENIC
SBS	Chr12	2132309	G-A	Homo	INTERGENIC
SBS	Chr12	4706614	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	867784	868009	225
Deletion	Chr12	917349	917351	2
Deletion	Chr8	3070615	3070619	4
Deletion	Chr4	6877981	6877983	2
Deletion	Chr8	13835312	13835315	3
Deletion	Chr10	16862001	16949000	86999	16
Deletion	Chr8	17474504	17474520	16
Deletion	Chr4	19535184	19535193	9
Deletion	Chr4	20335098	20335100	2
Deletion	Chr12	20728524	20728527	3
Deletion	Chr10	21286432	21286438	6
Deletion	Chr4	24241617	24241631	14
Deletion	Chr3	26539410	26539411	1
Deletion	Chr7	29474927	29474930	3
Deletion	Chr3	37529087	37529088	1
Deletion	Chr1	41481004	41481017	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	23369841	23855242	OsKitaake08g183900
Inversion	Chr8	23369857	23855258	OsKitaake08g183900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes