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Mutant Information

Mutant Name	FN3757-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3757-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11849620 C-T Hetero INTERGENIC
SBS Chr1 20176319 G-A Hetero INTERGENIC
SBS Chr1 32592137 G-T Hetero INTERGENIC
SBS Chr2 16791 T-A Hetero INTRON
SBS Chr2 8842422 C-A Homo INTERGENIC
SBS Chr2 22381006 G-T Hetero INTERGENIC
SBS Chr2 34254149 T-C Homo INTERGENIC
SBS Chr3 914940 T-C Hetero INTERGENIC
SBS Chr3 4768530 C-T Hetero INTERGENIC
SBS Chr3 20097462 G-A Hetero INTERGENIC
SBS Chr3 22305575 T-C Homo INTRON
SBS Chr4 3706680 T-A Hetero INTERGENIC
SBS Chr4 14327279 A-T Hetero INTERGENIC
SBS Chr4 31584707 T-C Hetero UTR_3_PRIME
SBS Chr4 36667909 G-A Hetero INTERGENIC
SBS Chr5 21888670 A-G Hetero INTERGENIC
SBS Chr5 29330204 T-C Hetero INTERGENIC
SBS Chr5 29890731 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g286400
SBS Chr6 11557300 A-T Hetero INTERGENIC
SBS Chr6 11557301 A-T Hetero INTERGENIC
SBS Chr6 13756223 C-G Hetero INTERGENIC
SBS Chr6 16824015 T-A Hetero INTERGENIC
SBS Chr6 22069438 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 14723260 T-C Hetero INTERGENIC
SBS Chr7 23676619 T-A Hetero INTERGENIC
SBS Chr8 11123892 C-A Homo INTERGENIC
SBS Chr8 11133320 C-T Homo INTERGENIC
SBS Chr8 12355054 G-A Homo INTRON
SBS Chr8 16212908 C-T Hetero INTERGENIC
SBS Chr8 26748641 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g216200
SBS Chr9 10121443 G-A Hetero INTERGENIC
SBS Chr9 18433478 T-A Hetero INTRON
SBS Chr10 3280743 G-C Homo INTERGENIC
SBS Chr11 9079033 C-T Hetero INTERGENIC
SBS Chr11 11184032 A-T Hetero INTERGENIC
SBS Chr11 14157270 C-T Hetero INTERGENIC
SBS Chr11 15957094 G-A Hetero INTERGENIC
SBS Chr11 20219555 C-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4167001 4176000 8999 OsKitaake11g056500
Deletion Chr3 5755558 5755564 6
Deletion Chr8 10933466 10933467 1 OsKitaake08g098200
Deletion Chr8 11621184 11621212 28
Deletion Chr6 11621475 11621489 14
Deletion Chr1 12549626 12549627 1
Deletion Chr7 13088001 13153000 64999 4
Deletion Chr1 13121048 13121049 1
Deletion Chr1 17510564 17510566 2
Deletion Chr9 17890001 17913000 22999 5
Deletion Chr8 17997953 17997958 5
Deletion Chr3 21326455 21326456 1
Deletion Chr3 22677299 22677307 8
Deletion Chr11 23286751 23286770 19
Deletion Chr5 26508394 26508398 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 26181491 26189358 OsKitaake06g234300
Inversion Chr6 26181497 26189399 OsKitaake06g234300
Inversion Chr5 27154665 27842468 2
Inversion Chr5 27154667 27842472 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11849620	C-T	Hetero	INTERGENIC
SBS	Chr1	20176319	G-A	Hetero	INTERGENIC
SBS	Chr1	32592137	G-T	Hetero	INTERGENIC
SBS	Chr2	16791	T-A	Hetero	INTRON
SBS	Chr2	8842422	C-A	Homo	INTERGENIC
SBS	Chr2	22381006	G-T	Hetero	INTERGENIC
SBS	Chr2	34254149	T-C	Homo	INTERGENIC
SBS	Chr3	914940	T-C	Hetero	INTERGENIC
SBS	Chr3	4768530	C-T	Hetero	INTERGENIC
SBS	Chr3	20097462	G-A	Hetero	INTERGENIC
SBS	Chr3	22305575	T-C	Homo	INTRON
SBS	Chr4	3706680	T-A	Hetero	INTERGENIC
SBS	Chr4	14327279	A-T	Hetero	INTERGENIC
SBS	Chr4	31584707	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	36667909	G-A	Hetero	INTERGENIC
SBS	Chr5	21888670	A-G	Hetero	INTERGENIC
SBS	Chr5	29330204	T-C	Hetero	INTERGENIC
SBS	Chr5	29890731	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g286400
SBS	Chr6	11557300	A-T	Hetero	INTERGENIC
SBS	Chr6	11557301	A-T	Hetero	INTERGENIC
SBS	Chr6	13756223	C-G	Hetero	INTERGENIC
SBS	Chr6	16824015	T-A	Hetero	INTERGENIC
SBS	Chr6	22069438	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	14723260	T-C	Hetero	INTERGENIC
SBS	Chr7	23676619	T-A	Hetero	INTERGENIC
SBS	Chr8	11123892	C-A	Homo	INTERGENIC
SBS	Chr8	11133320	C-T	Homo	INTERGENIC
SBS	Chr8	12355054	G-A	Homo	INTRON
SBS	Chr8	16212908	C-T	Hetero	INTERGENIC
SBS	Chr8	26748641	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g216200
SBS	Chr9	10121443	G-A	Hetero	INTERGENIC
SBS	Chr9	18433478	T-A	Hetero	INTRON
SBS	Chr10	3280743	G-C	Homo	INTERGENIC
SBS	Chr11	9079033	C-T	Hetero	INTERGENIC
SBS	Chr11	11184032	A-T	Hetero	INTERGENIC
SBS	Chr11	14157270	C-T	Hetero	INTERGENIC
SBS	Chr11	15957094	G-A	Hetero	INTERGENIC
SBS	Chr11	20219555	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4167001	4176000	8999	OsKitaake11g056500
Deletion	Chr3	5755558	5755564	6
Deletion	Chr8	10933466	10933467	1	OsKitaake08g098200
Deletion	Chr8	11621184	11621212	28
Deletion	Chr6	11621475	11621489	14
Deletion	Chr1	12549626	12549627	1
Deletion	Chr7	13088001	13153000	64999	4
Deletion	Chr1	13121048	13121049	1
Deletion	Chr1	17510564	17510566	2
Deletion	Chr9	17890001	17913000	22999	5
Deletion	Chr8	17997953	17997958	5
Deletion	Chr3	21326455	21326456	1
Deletion	Chr3	22677299	22677307	8
Deletion	Chr11	23286751	23286770	19
Deletion	Chr5	26508394	26508398	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	26181491	26189358	OsKitaake06g234300
Inversion	Chr6	26181497	26189399	OsKitaake06g234300
Inversion	Chr5	27154665	27842468	2
Inversion	Chr5	27154667	27842472	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes