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| Mutant Information |
|---|
| Mutant Name | FN3758-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3758-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 33313851 | C-T | Homo | INTRON | |
| SBS | Chr3 | 8740437 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22619178 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 1788359 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4015826 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g019500 |
| SBS | Chr4 | 9885052 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19202483 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 2280489 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23749766 | G-A | Hetero | START_GAINED | |
| SBS | Chr6 | 13509421 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 23392491 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 10381934 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10445450 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 12575366 | G-A | Homo | INTRON | |
| SBS | Chr7 | 15782368 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 2577412 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 13416836 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7060859 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 22602138 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 3609271 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr10 | 9896866 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 813976 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 17719173 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 24383939 | T-G | Homo | INTERGENIC | |
| SBS | Chr11 | 25675900 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11192443 | C-G | Hetero | UTR_5_PRIME |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 3517211 | 3517214 | 3 | |
| Deletion | Chr12 | 3624449 | 3624450 | 1 | OsKitaake12g050500 |
| Deletion | Chr2 | 4692011 | 4692015 | 4 | |
| Deletion | Chr12 | 8776973 | 8776975 | 2 | |
| Deletion | Chr3 | 11593426 | 11593435 | 9 | |
| Deletion | Chr11 | 12568001 | 12741000 | 172999 | 3 |
| Deletion | Chr9 | 13262598 | 13262599 | 1 | |
| Deletion | Chr3 | 17176227 | 17176235 | 8 | |
| Deletion | Chr12 | 17992123 | 17992124 | 1 | |
| Deletion | Chr9 | 22250746 | 22250747 | 1 | |
| Deletion | Chr12 | 24077166 | 24077167 | 1 | OsKitaake12g193800 |
| Deletion | Chr1 | 24209378 | 24209392 | 14 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 25185902 | 25185905 | 2 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 13599226 | 13648708 | |
| Inversion | Chr6 | 25859510 | 25890037 | |
| Inversion | Chr6 | 25860296 | 25890042 | OsKitaake06g230200 |
| Inversion | Chr4 | 26192264 | 26362792 | 2 |
| Inversion | Chr4 | 26362811 | 26533103 | OsKitaake04g188200 |
| Inversion | Chr5 | 27120192 | 27123981 | |
| Inversion | Chr5 | 27121193 | 27123986 | OsKitaake05g244300 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 5697647 | Chr3 | 12919709 | OsKitaake03g173500 |
| Translocation | Chr10 | 5698203 | Chr3 | 12919708 | OsKitaake03g173500 |
| Translocation | Chr11 | 13291876 | Chr8 | 4222993 | |
| Translocation | Chr12 | 24946935 | Chr10 | 7457216 |