Search Kitaake

Mutant Information

Mutant Name	FN3759-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3759-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3102323 G-A Hetero INTERGENIC
SBS Chr1 10969043 G-T Hetero INTERGENIC
SBS Chr1 15406603 C-T Hetero INTERGENIC
SBS Chr1 19375242 C-T Hetero INTERGENIC
SBS Chr1 21271069 C-T Hetero INTERGENIC
SBS Chr1 22410710 T-C Hetero INTERGENIC
SBS Chr1 23055232 C-T Hetero INTERGENIC
SBS Chr1 34115185 G-A Homo INTERGENIC
SBS Chr2 5016599 C-T Hetero INTERGENIC
SBS Chr2 10276407 C-T Hetero INTERGENIC
SBS Chr2 12284791 C-A Hetero INTERGENIC
SBS Chr2 15048749 C-A Hetero INTERGENIC
SBS Chr3 1565580 A-C Homo INTERGENIC
SBS Chr3 16028093 C-T Hetero INTERGENIC
SBS Chr3 23242630 G-A Hetero INTERGENIC
SBS Chr3 26142851 T-C Hetero INTERGENIC
SBS Chr3 31195760 A-G Hetero INTRON
SBS Chr4 7506272 T-A Homo INTERGENIC
SBS Chr4 33504978 G-A Hetero INTERGENIC
SBS Chr5 17680321 C-G Hetero INTERGENIC
SBS Chr6 20512093 G-A Hetero INTERGENIC
SBS Chr7 22039744 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g185600
SBS Chr7 26065769 G-T Homo INTERGENIC
SBS Chr8 16162474 G-C Hetero INTERGENIC
SBS Chr8 24369929 G-C Hetero INTRON
SBS Chr9 20757886 G-A Homo INTERGENIC
SBS Chr10 5261154 C-A Homo INTERGENIC
SBS Chr10 12018136 G-A Homo INTERGENIC
SBS Chr11 176978 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g000800
SBS Chr11 176979 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g000800

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 767078 767079 1
Deletion Chr7 1121897 1121912 15
Deletion Chr11 3465001 3672000 206999 29
Deletion Chr6 3487989 3488012 23
Deletion Chr12 11976824 11976827 3 OsKitaake12g104600
Deletion Chr10 18104588 18104589 1 OsKitaake10g127405
Deletion Chr1 22102001 22171000 68999 4
Deletion Chr11 22424574 22424579 5
Deletion Chr11 22689833 22689840 7
Deletion Chr6 23235514 23235515 1
Deletion Chr6 23528958 23528964 6
Deletion Chr3 24032243 24032245 2
Deletion Chr11 24083001 24116000 32999 2
Deletion Chr2 26276103 26276124 21
Deletion Chr4 29504187 29504192 5
Deletion Chr1 39873209 39873210 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 2290130 2290133 2
Insertion Chr7 3939810 3939813 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 4163414 4621680 OsKitaake12g061200
Inversion Chr12 4163424 4781741
Inversion Chr1 9840916 9943008 OsKitaake01g124700
Inversion Chr1 9840922 9943011 OsKitaake01g124700

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 3795063 Chr2 32555111 OsKitaake02g332600
Translocation Chr4 3796645 Chr2 32555108 OsKitaake02g332600
Translocation Chr12 4774907 Chr8 5835742
Translocation Chr12 4776127 Chr8 5839351
Translocation Chr8 5835755 Chr5 22250492
Translocation Chr8 5836072 Chr5 22250483

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3102323	G-A	Hetero	INTERGENIC
SBS	Chr1	10969043	G-T	Hetero	INTERGENIC
SBS	Chr1	15406603	C-T	Hetero	INTERGENIC
SBS	Chr1	19375242	C-T	Hetero	INTERGENIC
SBS	Chr1	21271069	C-T	Hetero	INTERGENIC
SBS	Chr1	22410710	T-C	Hetero	INTERGENIC
SBS	Chr1	23055232	C-T	Hetero	INTERGENIC
SBS	Chr1	34115185	G-A	Homo	INTERGENIC
SBS	Chr2	5016599	C-T	Hetero	INTERGENIC
SBS	Chr2	10276407	C-T	Hetero	INTERGENIC
SBS	Chr2	12284791	C-A	Hetero	INTERGENIC
SBS	Chr2	15048749	C-A	Hetero	INTERGENIC
SBS	Chr3	1565580	A-C	Homo	INTERGENIC
SBS	Chr3	16028093	C-T	Hetero	INTERGENIC
SBS	Chr3	23242630	G-A	Hetero	INTERGENIC
SBS	Chr3	26142851	T-C	Hetero	INTERGENIC
SBS	Chr3	31195760	A-G	Hetero	INTRON
SBS	Chr4	7506272	T-A	Homo	INTERGENIC
SBS	Chr4	33504978	G-A	Hetero	INTERGENIC
SBS	Chr5	17680321	C-G	Hetero	INTERGENIC
SBS	Chr6	20512093	G-A	Hetero	INTERGENIC
SBS	Chr7	22039744	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g185600
SBS	Chr7	26065769	G-T	Homo	INTERGENIC
SBS	Chr8	16162474	G-C	Hetero	INTERGENIC
SBS	Chr8	24369929	G-C	Hetero	INTRON
SBS	Chr9	20757886	G-A	Homo	INTERGENIC
SBS	Chr10	5261154	C-A	Homo	INTERGENIC
SBS	Chr10	12018136	G-A	Homo	INTERGENIC
SBS	Chr11	176978	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g000800
SBS	Chr11	176979	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g000800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	767078	767079	1
Deletion	Chr7	1121897	1121912	15
Deletion	Chr11	3465001	3672000	206999	29
Deletion	Chr6	3487989	3488012	23
Deletion	Chr12	11976824	11976827	3	OsKitaake12g104600
Deletion	Chr10	18104588	18104589	1	OsKitaake10g127405
Deletion	Chr1	22102001	22171000	68999	4
Deletion	Chr11	22424574	22424579	5
Deletion	Chr11	22689833	22689840	7
Deletion	Chr6	23235514	23235515	1
Deletion	Chr6	23528958	23528964	6
Deletion	Chr3	24032243	24032245	2
Deletion	Chr11	24083001	24116000	32999	2
Deletion	Chr2	26276103	26276124	21
Deletion	Chr4	29504187	29504192	5
Deletion	Chr1	39873209	39873210	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4163414	4621680	OsKitaake12g061200
Inversion	Chr12	4163424	4781741
Inversion	Chr1	9840916	9943008	OsKitaake01g124700
Inversion	Chr1	9840922	9943011	OsKitaake01g124700

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes