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| Mutant Information |
|---|
| Mutant Name | FN3760-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3760-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6530663 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 15988438 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 18874431 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 20482280 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37021218 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 2790422 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 2790796 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 7898937 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19530973 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 3423171 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21770432 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 24705552 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 982415 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3546914 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 19099283 | A-T | Homo | INTRON | |
| SBS | Chr5 | 13972914 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 27346478 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 4466433 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23437345 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27040141 | C-A | Homo | INTRON | |
| SBS | Chr8 | 20097211 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14888140 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23114376 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11999659 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 5373271 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8495256 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15344841 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 24729957 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26098168 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g216000 |
| SBS | Chr12 | 26098169 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g216000 |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 3420627 | 3420640 | 13 | |
| Deletion | Chr2 | 14764806 | 14764825 | 19 | |
| Deletion | Chr6 | 16848558 | 16848559 | 1 | |
| Deletion | Chr12 | 17424739 | 17424740 | 1 | |
| Deletion | Chr11 | 19477218 | 19477224 | 6 | |
| Deletion | Chr10 | 22165746 | 22165749 | 3 | |
| Deletion | Chr1 | 24685459 | 24685460 | 1 | |
| Deletion | Chr8 | 25290383 | 25290385 | 2 | |
| Deletion | Chr5 | 26877838 | 26877857 | 19 | |
| Deletion | Chr1 | 37234729 | 37234738 | 9 | OsKitaake01g397300 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 22908659 | 22908663 | 3 | |
| Insertion | Chr10 | 13751630 | 13751634 | 3 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 5584347 | Chr6 | 5762749 | OsKitaake06g075900 |
| Translocation | Chr12 | 5609082 | Chr2 | 14128672 | OsKitaake02g152100 |
| Translocation | Chr6 | 5762735 | Chr2 | 14128230 | 2 |
| Translocation | Chr6 | 21176546 | Chr4 | 15124488 | 2 |
| Translocation | Chr6 | 21176559 | Chr4 | 15123873 | OsKitaake06g187900 |