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| Mutant Information |
|---|
| Mutant Name | FN3761-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3761-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10206985 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 13938528 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 22813623 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 43883983 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 6614349 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 12016755 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 13250851 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 17792447 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 23463933 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 7621009 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 10868384 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18062660 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 22747654 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 33168050 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10839459 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 22344406 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 29892410 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 29973049 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8540215 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22125950 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 28040483 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 16157747 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6623861 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20413750 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 23188385 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1578922 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 3339475 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 15608828 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 16684711 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 19026553 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12528327 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 23209671 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 23264544 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 23786641 | A-G | Hetero | INTRON | |
| SBS | Chr12 | 14552901 | C-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2364478 | 2365056 | 578 | |
| Deletion | Chr7 | 5842001 | 5966000 | 123999 | 9 |
| Deletion | Chr3 | 6612163 | 6612175 | 12 | |
| Deletion | Chr3 | 7286781 | 7286784 | 3 | |
| Deletion | Chr12 | 12544479 | 12544481 | 2 | |
| Deletion | Chr8 | 20773109 | 20773111 | 2 | |
| Deletion | Chr6 | 21260310 | 21260311 | 1 | OsKitaake06g188300 |
| Deletion | Chr3 | 22461585 | 22461756 | 171 | |
| Deletion | Chr4 | 22758546 | 22758551 | 5 | |
| Deletion | Chr5 | 22787292 | 22787304 | 12 | |
| Deletion | Chr4 | 29903309 | 29903310 | 1 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 17274180 | Chr3 | 33982545 | OsKitaake03g366900 |
| Translocation | Chr11 | 17560598 | Chr3 | 33982538 | OsKitaake03g366900 |