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| Mutant Information |
|---|
| Mutant Name | FN3762-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3762-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18009721 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 35392323 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 1829119 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g026100 |
| SBS | Chr3 | 3116601 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23791540 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29138032 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 30684711 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 32437982 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 32437984 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 33086419 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 2796116 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 19780100 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 33024900 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3873338 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 5818589 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12126343 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12265393 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 18593115 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 8530937 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12570123 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 13623236 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 15213049 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 29058398 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1963301 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13365840 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4961697 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 11960885 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 26905312 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 3073925 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13954629 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16005325 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 26406890 | T-G | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 3977899 | 3977908 | 9 | |
| Deletion | Chr10 | 5503220 | 5503226 | 6 | |
| Deletion | Chr3 | 6576790 | 6576797 | 7 | |
| Deletion | Chr5 | 7876357 | 7876365 | 8 | |
| Deletion | Chr11 | 13372159 | 13372169 | 10 | |
| Deletion | Chr3 | 17546338 | 17546339 | 1 | OsKitaake03g215900 |
| Deletion | Chr4 | 20474870 | 20474873 | 3 | |
| Deletion | Chr5 | 21772844 | 21772846 | 2 | |
| Deletion | Chr1 | 22360001 | 22373000 | 12999 | |
| Deletion | Chr1 | 34008206 | 34008211 | 5 | |
| Deletion | Chr1 | 35495434 | 35495439 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 23920093 | 23920096 | 2 | |
| Insertion | Chr12 | 26341626 | 26341633 | 6 | OsKitaake12g218700  |
| Insertion | Chr9 | 2740684 | 2740686 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 22360102 | 22442362 | |
| Inversion | Chr1 | 24998300 | 25148761 | OsKitaake01g241700 |
| Inversion | Chr1 | 24998329 | 25148766 | OsKitaake01g241700 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 24924451 | Chr3 | 10399013 | |
| Translocation | Chr4 | 35892899 | Chr1 | 1597957 | OsKitaake04g307700 |
| Translocation | Chr4 | 35892901 | Chr1 | 1578712 | OsKitaake04g307700 |