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Mutant Information

Mutant Name	FN3763-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3763-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5454317 A-T Hetero INTERGENIC
SBS Chr1 7470103 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g093400
SBS Chr1 38219916 C-T Homo INTERGENIC
SBS Chr1 44121273 C-T Hetero INTERGENIC
SBS Chr2 7032221 G-A Hetero INTERGENIC
SBS Chr2 19655605 A-T Homo NON_SYNONYMOUS_CODING OsKitaake02g192100
SBS Chr2 28214597 C-T Homo INTERGENIC
SBS Chr3 10330233 C-T Hetero INTERGENIC
SBS Chr3 16414356 C-T Hetero INTERGENIC
SBS Chr3 30819914 T-A Hetero INTRON
SBS Chr4 31860191 G-A Homo INTERGENIC
SBS Chr5 14322221 C-T Hetero INTERGENIC
SBS Chr5 18212978 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g141800
SBS Chr5 21915743 C-T Hetero INTERGENIC
SBS Chr5 22926587 A-T Hetero INTERGENIC
SBS Chr5 22926591 T-C Hetero INTERGENIC
SBS Chr5 22926595 G-A Hetero INTERGENIC
SBS Chr5 23463896 C-T Hetero INTERGENIC
SBS Chr6 22388679 C-T Hetero INTERGENIC
SBS Chr6 27292496 G-A Hetero INTERGENIC
SBS Chr7 19621797 T-G Hetero INTERGENIC
SBS Chr7 23247735 G-A Hetero INTRON
SBS Chr8 21137854 A-T Homo INTERGENIC
SBS Chr8 21137855 A-T Homo INTERGENIC
SBS Chr8 27766251 A-G Hetero UTR_3_PRIME
SBS Chr9 3945881 T-A Homo INTERGENIC
SBS Chr9 18861274 C-A Hetero INTRON
SBS Chr10 19124161 A-T Hetero INTRON
SBS Chr10 23974254 T-C Hetero INTERGENIC
SBS Chr11 10893630 C-T Homo INTERGENIC
SBS Chr12 7279141 G-A Hetero INTERGENIC
SBS Chr12 17831136 G-A Hetero INTERGENIC
SBS Chr12 26736119 G-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 513028 513030 2
Deletion Chr6 6133150 6133159 9
Deletion Chr7 7809476 7809482 6
Deletion Chr1 8491670 8491674 4 OsKitaake01g106000
Deletion Chr9 14753434 14753442 8
Deletion Chr8 15037001 15054000 16999
Deletion Chr8 15579001 15617000 37999 2
Deletion Chr5 16810826 16810834 8
Deletion Chr3 17358936 17359015 79
Deletion Chr11 19538790 19538791 1
Deletion Chr4 22865364 22865383 19
Deletion Chr8 24160184 24160188 4
Deletion Chr8 24426736 24426737 1
Deletion Chr1 24749630 24749639 9
Deletion Chr8 27628312 27628313 1 OsKitaake08g232100
Deletion Chr11 28510731 28510736 5
Deletion Chr2 28902980 28902988 8
Deletion Chr4 30797630 30797635 5 OsKitaake04g238100
Deletion Chr1 37175502 37175510 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8736453 8736456 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 20987537 Chr2 29001599 OsKitaake09g179800
Translocation Chr9 20987543 Chr2 29001848 OsKitaake09g179800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5454317	A-T	Hetero	INTERGENIC
SBS	Chr1	7470103	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g093400
SBS	Chr1	38219916	C-T	Homo	INTERGENIC
SBS	Chr1	44121273	C-T	Hetero	INTERGENIC
SBS	Chr2	7032221	G-A	Hetero	INTERGENIC
SBS	Chr2	19655605	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g192100
SBS	Chr2	28214597	C-T	Homo	INTERGENIC
SBS	Chr3	10330233	C-T	Hetero	INTERGENIC
SBS	Chr3	16414356	C-T	Hetero	INTERGENIC
SBS	Chr3	30819914	T-A	Hetero	INTRON
SBS	Chr4	31860191	G-A	Homo	INTERGENIC
SBS	Chr5	14322221	C-T	Hetero	INTERGENIC
SBS	Chr5	18212978	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g141800
SBS	Chr5	21915743	C-T	Hetero	INTERGENIC
SBS	Chr5	22926587	A-T	Hetero	INTERGENIC
SBS	Chr5	22926591	T-C	Hetero	INTERGENIC
SBS	Chr5	22926595	G-A	Hetero	INTERGENIC
SBS	Chr5	23463896	C-T	Hetero	INTERGENIC
SBS	Chr6	22388679	C-T	Hetero	INTERGENIC
SBS	Chr6	27292496	G-A	Hetero	INTERGENIC
SBS	Chr7	19621797	T-G	Hetero	INTERGENIC
SBS	Chr7	23247735	G-A	Hetero	INTRON
SBS	Chr8	21137854	A-T	Homo	INTERGENIC
SBS	Chr8	21137855	A-T	Homo	INTERGENIC
SBS	Chr8	27766251	A-G	Hetero	UTR_3_PRIME
SBS	Chr9	3945881	T-A	Homo	INTERGENIC
SBS	Chr9	18861274	C-A	Hetero	INTRON
SBS	Chr10	19124161	A-T	Hetero	INTRON
SBS	Chr10	23974254	T-C	Hetero	INTERGENIC
SBS	Chr11	10893630	C-T	Homo	INTERGENIC
SBS	Chr12	7279141	G-A	Hetero	INTERGENIC
SBS	Chr12	17831136	G-A	Hetero	INTERGENIC
SBS	Chr12	26736119	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	513028	513030	2
Deletion	Chr6	6133150	6133159	9
Deletion	Chr7	7809476	7809482	6
Deletion	Chr1	8491670	8491674	4	OsKitaake01g106000
Deletion	Chr9	14753434	14753442	8
Deletion	Chr8	15037001	15054000	16999
Deletion	Chr8	15579001	15617000	37999	2
Deletion	Chr5	16810826	16810834	8
Deletion	Chr3	17358936	17359015	79
Deletion	Chr11	19538790	19538791	1
Deletion	Chr4	22865364	22865383	19
Deletion	Chr8	24160184	24160188	4
Deletion	Chr8	24426736	24426737	1
Deletion	Chr1	24749630	24749639	9
Deletion	Chr8	27628312	27628313	1	OsKitaake08g232100
Deletion	Chr11	28510731	28510736	5
Deletion	Chr2	28902980	28902988	8
Deletion	Chr4	30797630	30797635	5	OsKitaake04g238100
Deletion	Chr1	37175502	37175510	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	20987537	Chr2	29001599	OsKitaake09g179800
Translocation	Chr9	20987543	Chr2	29001848	OsKitaake09g179800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes