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Mutant Information

Mutant Name	FN3764-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3764-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 523384 A-G Hetero INTERGENIC
SBS Chr1 22033724 T-A Homo INTERGENIC
SBS Chr1 22243694 C-A Homo INTERGENIC
SBS Chr2 6542427 G-C Homo NON_SYNONYMOUS_CODING OsKitaake02g089000
SBS Chr2 22007695 C-T Homo INTERGENIC
SBS Chr4 7454452 T-C Homo INTERGENIC
SBS Chr4 14401994 T-A Homo INTERGENIC
SBS Chr4 27965261 G-T Hetero INTRON
SBS Chr5 11364440 C-G Hetero INTERGENIC
SBS Chr5 17152064 G-A Hetero INTERGENIC
SBS Chr5 21388313 C-T Homo INTERGENIC
SBS Chr5 21388314 A-T Homo INTERGENIC
SBS Chr5 28141738 C-T Homo INTERGENIC
SBS Chr6 743341 C-G Homo INTERGENIC
SBS Chr7 2384033 G-A Homo INTERGENIC
SBS Chr7 6651941 G-C Hetero INTERGENIC
SBS Chr7 6651942 A-G Hetero INTERGENIC
SBS Chr7 13552377 T-G Hetero INTERGENIC
SBS Chr7 13552378 T-A Hetero INTERGENIC
SBS Chr8 1348537 C-G Homo INTERGENIC
SBS Chr8 4520730 T-A Homo INTERGENIC
SBS Chr9 15877614 A-G Hetero INTRON
SBS Chr9 17705975 A-T Hetero INTERGENIC
SBS Chr11 9348929 G-T Hetero INTERGENIC
SBS Chr11 11158038 T-C Hetero INTERGENIC
SBS Chr11 23930356 A-T Hetero INTERGENIC
SBS Chr11 25033166 T-C Hetero INTERGENIC
SBS Chr11 28877856 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g236500
SBS Chr12 3209899 T-C Homo INTRON
SBS Chr12 7392058 G-A Homo INTERGENIC
SBS Chr12 9129047 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g090600
SBS Chr12 9664330 G-A Hetero INTERGENIC
SBS Chr12 17170645 T-C Homo NON_SYNONYMOUS_CODING OsKitaake12g126600
SBS Chr12 18741559 C-G Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1006271 1006274 3
Deletion Chr9 2927565 2927567 2
Deletion Chr9 5233633 5233636 3
Deletion Chr6 8982751 8982760 9
Deletion Chr12 9551149 9551152 3
Deletion Chr5 11474525 11474541 16
Deletion Chr5 12515534 12515689 155
Deletion Chr8 12574138 12574141 3
Deletion Chr3 14694538 14694539 1 OsKitaake03g191000
Deletion Chr1 15587248 15587251 3
Deletion Chr10 22078447 22078453 6
Deletion Chr5 25619202 25619209 7
Deletion Chr12 26767545 26767553 8
Deletion Chr3 29438630 29438634 4
Deletion Chr1 29871346 29871354 8
Deletion Chr1 36275447 36275449 2
Deletion Chr3 37776347 37776364 17

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 13813908 13813911 2
Insertion Chr10 11626554 11626558 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 16061843 Chr7 8327319 OsKitaake09g115100
Translocation Chr9 16062058 Chr7 8327315 OsKitaake09g115100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	523384	A-G	Hetero	INTERGENIC
SBS	Chr1	22033724	T-A	Homo	INTERGENIC
SBS	Chr1	22243694	C-A	Homo	INTERGENIC
SBS	Chr2	6542427	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g089000
SBS	Chr2	22007695	C-T	Homo	INTERGENIC
SBS	Chr4	7454452	T-C	Homo	INTERGENIC
SBS	Chr4	14401994	T-A	Homo	INTERGENIC
SBS	Chr4	27965261	G-T	Hetero	INTRON
SBS	Chr5	11364440	C-G	Hetero	INTERGENIC
SBS	Chr5	17152064	G-A	Hetero	INTERGENIC
SBS	Chr5	21388313	C-T	Homo	INTERGENIC
SBS	Chr5	21388314	A-T	Homo	INTERGENIC
SBS	Chr5	28141738	C-T	Homo	INTERGENIC
SBS	Chr6	743341	C-G	Homo	INTERGENIC
SBS	Chr7	2384033	G-A	Homo	INTERGENIC
SBS	Chr7	6651941	G-C	Hetero	INTERGENIC
SBS	Chr7	6651942	A-G	Hetero	INTERGENIC
SBS	Chr7	13552377	T-G	Hetero	INTERGENIC
SBS	Chr7	13552378	T-A	Hetero	INTERGENIC
SBS	Chr8	1348537	C-G	Homo	INTERGENIC
SBS	Chr8	4520730	T-A	Homo	INTERGENIC
SBS	Chr9	15877614	A-G	Hetero	INTRON
SBS	Chr9	17705975	A-T	Hetero	INTERGENIC
SBS	Chr11	9348929	G-T	Hetero	INTERGENIC
SBS	Chr11	11158038	T-C	Hetero	INTERGENIC
SBS	Chr11	23930356	A-T	Hetero	INTERGENIC
SBS	Chr11	25033166	T-C	Hetero	INTERGENIC
SBS	Chr11	28877856	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g236500
SBS	Chr12	3209899	T-C	Homo	INTRON
SBS	Chr12	7392058	G-A	Homo	INTERGENIC
SBS	Chr12	9129047	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g090600
SBS	Chr12	9664330	G-A	Hetero	INTERGENIC
SBS	Chr12	17170645	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g126600
SBS	Chr12	18741559	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1006271	1006274	3
Deletion	Chr9	2927565	2927567	2
Deletion	Chr9	5233633	5233636	3
Deletion	Chr6	8982751	8982760	9
Deletion	Chr12	9551149	9551152	3
Deletion	Chr5	11474525	11474541	16
Deletion	Chr5	12515534	12515689	155
Deletion	Chr8	12574138	12574141	3
Deletion	Chr3	14694538	14694539	1	OsKitaake03g191000
Deletion	Chr1	15587248	15587251	3
Deletion	Chr10	22078447	22078453	6
Deletion	Chr5	25619202	25619209	7
Deletion	Chr12	26767545	26767553	8
Deletion	Chr3	29438630	29438634	4
Deletion	Chr1	29871346	29871354	8
Deletion	Chr1	36275447	36275449	2
Deletion	Chr3	37776347	37776364	17

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	16061843	Chr7	8327319	OsKitaake09g115100
Translocation	Chr9	16062058	Chr7	8327315	OsKitaake09g115100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes