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| Mutant Information |
|---|
| Mutant Name | FN3765-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3765-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 29402019 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 23156605 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 3596870 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 4386877 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g063200 |
| SBS | Chr3 | 4386883 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g063200 |
| SBS | Chr3 | 4386884 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g063200 |
| SBS | Chr3 | 20959363 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g233300 |
| SBS | Chr3 | 23677312 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30268563 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 36219875 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 23093387 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 2197478 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 15993770 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 13760674 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 17517789 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 2613087 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 7521348 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8587655 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14047074 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 2871767 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 3242288 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 14085677 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18491116 | A-C | Hetero | INTRON | |
| SBS | Chr12 | 22408969 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 2145872 | 2145876 | 4 | |
| Deletion | Chr3 | 2173504 | 2173506 | 2 | |
| Deletion | Chr9 | 8497457 | 8497459 | 2 | |
| Deletion | Chr3 | 12861176 | 12861179 | 3 | |
| Deletion | Chr11 | 16616001 | 16745000 | 128999 | 6 |
| Deletion | Chr6 | 16985254 | 16985262 | 8 | |
| Deletion | Chr12 | 18922068 | 18922069 | 1 | |
| Deletion | Chr12 | 20330223 | 20330225 | 2 | |
| Deletion | Chr9 | 21651001 | 21904000 | 252999 | 39 |
| Deletion | Chr7 | 28697983 | 28697995 | 12 | OsKitaake07g273750 |
| Deletion | Chr4 | 28802001 | 28834000 | 31999 | 4 |
| Deletion | Chr6 | 30166006 | 30166013 | 7 | |
| Deletion | Chr3 | 32901325 | 32901331 | 6 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 23426614 | 23426617 | 2 | |
| Insertion | Chr12 | 7256822 | 7256825 | 2 | |
| Insertion | Chr12 | 7361871 | 7361876 | 4 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 28803139 | 28908172 | |
| Inversion | Chr7 | 28803165 | 28917333 | |
| Inversion | Chr4 | 31306094 | 32283603 | OsKitaake04g244900 |
| Inversion | Chr4 | 31306101 | 32283607 | OsKitaake04g244900 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 21118384 | Chr1 | 24964915 | OsKitaake06g187500 |
| Translocation | Chr7 | 28908184 | Chr6 | 3998956 | OsKitaake06g056001 |
| Translocation | Chr7 | 29320889 | Chr1 | 24966657 |