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Mutant Information

Mutant Name	FN3766-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3766-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6417168 C-T Homo INTERGENIC
SBS Chr1 31987049 T-A Hetero INTRON
SBS Chr1 31987052 T-A Hetero INTRON
SBS Chr1 32880563 T-C Homo INTERGENIC
SBS Chr2 3039551 C-T Hetero INTERGENIC
SBS Chr2 10280343 T-A Homo INTERGENIC
SBS Chr2 11042983 A-T Hetero INTRON
SBS Chr2 17102766 G-A Hetero INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 3955259 A-G Homo UTR_5_PRIME
SBS Chr3 10104748 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 11571853 C-T Hetero INTERGENIC
SBS Chr3 26230028 C-A Homo INTERGENIC
SBS Chr3 27397135 G-A Homo INTERGENIC
SBS Chr4 23847301 C-T Hetero INTERGENIC
SBS Chr5 14710592 T-A Homo INTERGENIC
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr5 29995428 G-A Homo SYNONYMOUS_CODING
SBS Chr6 5826734 T-G Homo NON_SYNONYMOUS_CODING OsKitaake06g076700
SBS Chr6 18481855 C-A Homo INTRON
SBS Chr6 19940490 G-C Hetero INTERGENIC
SBS Chr7 18625661 G-T Homo INTERGENIC
SBS Chr7 21842312 C-T Homo INTERGENIC
SBS Chr8 23152681 T-G Hetero INTERGENIC
SBS Chr8 24464915 C-T Hetero INTRON
SBS Chr8 25139473 T-C Homo INTERGENIC
SBS Chr10 2465058 T-C Homo INTERGENIC
SBS Chr11 5640520 C-T Homo INTERGENIC
SBS Chr11 10251751 C-G Homo INTERGENIC
SBS Chr11 10251752 T-C Homo INTERGENIC
SBS Chr12 7543628 C-T Hetero INTERGENIC
SBS Chr12 12167953 C-G Hetero INTERGENIC
SBS Chr12 13097228 C-T Hetero INTERGENIC
SBS Chr12 19324800 A-G Homo INTRON
SBS Chr12 23506055 A-C Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2686956 2686957 1
Deletion Chr6 6613573 6613575 2 OsKitaake06g086300
Deletion Chr6 9173331 9173357 26
Deletion Chr11 11942907 11942912 5
Deletion Chr11 12141766 12141769 3
Deletion Chr9 12589038 12589046 8
Deletion Chr10 14047221 14047232 11
Deletion Chr6 14886843 14886860 17
Deletion Chr1 16652471 16652498 27
Deletion Chr1 20480973 20480974 1
Deletion Chr1 20969281 20969287 6
Deletion Chr7 21612656 21612665 9 OsKitaake07g180700
Deletion Chr12 23335373 23335385 12
Deletion Chr3 23574351 23574356 5
Deletion Chr5 25391167 25391170 3
Deletion Chr6 28151466 28151467 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 4854492 4854495 2
Insertion Chr10 4788133 4788136 2
Insertion Chr6 100901 100904 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 3195074 3273197
Inversion Chr9 3200693 3273201
Inversion Chr12 8791459 9073774
Inversion Chr12 8791465 9073802

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 33304 Chr4 5124207
Translocation Chr12 33315 Chr4 5228900
Translocation Chr11 18113440 Chr9 502308

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6417168	C-T	Homo	INTERGENIC
SBS	Chr1	31987049	T-A	Hetero	INTRON
SBS	Chr1	31987052	T-A	Hetero	INTRON
SBS	Chr1	32880563	T-C	Homo	INTERGENIC
SBS	Chr2	3039551	C-T	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Homo	INTERGENIC
SBS	Chr2	11042983	A-T	Hetero	INTRON
SBS	Chr2	17102766	G-A	Hetero	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	3955259	A-G	Homo	UTR_5_PRIME
SBS	Chr3	10104748	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	11571853	C-T	Hetero	INTERGENIC
SBS	Chr3	26230028	C-A	Homo	INTERGENIC
SBS	Chr3	27397135	G-A	Homo	INTERGENIC
SBS	Chr4	23847301	C-T	Hetero	INTERGENIC
SBS	Chr5	14710592	T-A	Homo	INTERGENIC
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr5	29995428	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	5826734	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g076700
SBS	Chr6	18481855	C-A	Homo	INTRON
SBS	Chr6	19940490	G-C	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Homo	INTERGENIC
SBS	Chr7	21842312	C-T	Homo	INTERGENIC
SBS	Chr8	23152681	T-G	Hetero	INTERGENIC
SBS	Chr8	24464915	C-T	Hetero	INTRON
SBS	Chr8	25139473	T-C	Homo	INTERGENIC
SBS	Chr10	2465058	T-C	Homo	INTERGENIC
SBS	Chr11	5640520	C-T	Homo	INTERGENIC
SBS	Chr11	10251751	C-G	Homo	INTERGENIC
SBS	Chr11	10251752	T-C	Homo	INTERGENIC
SBS	Chr12	7543628	C-T	Hetero	INTERGENIC
SBS	Chr12	12167953	C-G	Hetero	INTERGENIC
SBS	Chr12	13097228	C-T	Hetero	INTERGENIC
SBS	Chr12	19324800	A-G	Homo	INTRON
SBS	Chr12	23506055	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2686956	2686957	1
Deletion	Chr6	6613573	6613575	2	OsKitaake06g086300
Deletion	Chr6	9173331	9173357	26
Deletion	Chr11	11942907	11942912	5
Deletion	Chr11	12141766	12141769	3
Deletion	Chr9	12589038	12589046	8
Deletion	Chr10	14047221	14047232	11
Deletion	Chr6	14886843	14886860	17
Deletion	Chr1	16652471	16652498	27
Deletion	Chr1	20480973	20480974	1
Deletion	Chr1	20969281	20969287	6
Deletion	Chr7	21612656	21612665	9	OsKitaake07g180700
Deletion	Chr12	23335373	23335385	12
Deletion	Chr3	23574351	23574356	5
Deletion	Chr5	25391167	25391170	3
Deletion	Chr6	28151466	28151467	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3195074	3273197
Inversion	Chr9	3200693	3273201
Inversion	Chr12	8791459	9073774
Inversion	Chr12	8791465	9073802

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes