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| Mutant Information |
|---|
| Mutant Name | FN3767-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3767-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6387180 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 30728647 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32271130 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19064156 | T-G | Homo | INTERGENIC | |
| SBS | Chr2 | 26810294 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g267800 |
| SBS | Chr3 | 5949162 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 5949167 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 5949175 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 9119167 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26143722 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 5952012 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 13758283 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 33741508 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10981233 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2022244 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 23893892 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 26740955 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 30924508 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 10385810 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12528664 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 18382835 | C-T | Homo | INTRON | |
| SBS | Chr9 | 5339094 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12998774 | C-G | Hetero | INTRON | |
| SBS | Chr9 | 13492337 | T-C | Homo | INTRON | |
| SBS | Chr10 | 3312276 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4331622 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 12375697 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 15547577 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24040188 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 9889578 | T-C | Homo | INTERGENIC |
Deletions: 7
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 9445784 | 9445791 | 6 | |
| Insertion | Chr10 | 4492991 | 4492995 | 3 | |
| Insertion | Chr5 | 30229879 | 30229881 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 24532744 | 24581230 | |
| Inversion | Chr7 | 24537274 | 24581236 | OsKitaake07g218600 |
| Inversion | Chr1 | 30475914 | 30681467 | OsKitaake01g301300 |
| Inversion | Chr1 | 30475915 | 31334622 | OsKitaake01g301300 |