Search Kitaake

Mutant Information

Mutant Name	FN3768-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3768-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9661323 G-T Hetero INTERGENIC
SBS Chr1 35297799 G-A Hetero INTRON
SBS Chr1 36684810 C-T Hetero INTERGENIC
SBS Chr1 38831562 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g416100
SBS Chr2 623169 C-T Hetero INTERGENIC
SBS Chr2 1443238 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 34625237 C-A Hetero INTERGENIC
SBS Chr3 20793929 A-T Hetero UTR_3_PRIME
SBS Chr3 23741875 G-T Hetero INTERGENIC
SBS Chr4 9420259 G-A Hetero INTERGENIC
SBS Chr4 14314456 G-A Hetero INTERGENIC
SBS Chr5 9611535 G-C Hetero INTERGENIC
SBS Chr7 8673478 C-A Hetero INTERGENIC
SBS Chr7 11393995 G-A Homo INTERGENIC
SBS Chr8 105141 T-A Hetero INTRON
SBS Chr8 19091073 G-T Homo INTERGENIC
SBS Chr8 21263100 G-T Hetero INTERGENIC
SBS Chr9 15177837 G-T Hetero INTERGENIC
SBS Chr10 8826885 G-T Hetero INTERGENIC
SBS Chr10 17124732 G-A Hetero INTERGENIC
SBS Chr10 20579937 T-C Hetero INTERGENIC
SBS Chr12 5409219 G-A Hetero INTERGENIC
SBS Chr12 15811628 G-A Homo INTERGENIC
SBS Chr12 21932705 A-G Hetero SYNONYMOUS_CODING
SBS Chr12 24028180 G-A Hetero INTRON

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 46433 46441 8
Deletion Chr10 761513 761528 15
Deletion Chr10 3542705 3542719 14
Deletion Chr8 4133662 4133663 1
Deletion Chr6 4681948 4681955 7
Deletion Chr9 5245269 5245272 3
Deletion Chr1 5271894 5271895 1
Deletion Chr11 7365274 7365279 5
Deletion Chr8 9655234 9655250 16
Deletion Chr4 10753289 10753290 1
Deletion Chr3 13187773 13187775 2
Deletion Chr12 13670791 13670806 15
Deletion Chr3 14153237 14153240 3
Deletion Chr9 16785925 16785928 3
Deletion Chr7 20062330 20062345 15 OsKitaake07g164700
Deletion Chr6 21558874 21558886 12
Deletion Chr3 23196921 23196922 1
Deletion Chr8 23756728 23756729 1
Deletion Chr11 24005551 24005554 3 OsKitaake11g193000
Deletion Chr3 26158863 26158875 12
Deletion Chr6 26395316 26395317 1 OsKitaake06g236900
Deletion Chr3 28052904 28052908 4
Deletion Chr4 33704549 33704558 9
Deletion Chr4 35293068 35293079 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16857148 16857150 1
Insertion Chr12 10318112 10318144 31
Insertion Chr12 26049535 26049537 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 5185008 5430572
Inversion Chr10 22917547 23483608 OsKitaake10g191500
Inversion Chr10 22917565 23484176 OsKitaake10g191500
Inversion Chr2 26610443 26948592 OsKitaake02g266000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 23483630 Chr6 31013480
Translocation Chr10 23484160 Chr6 31013507

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9661323	G-T	Hetero	INTERGENIC
SBS	Chr1	35297799	G-A	Hetero	INTRON
SBS	Chr1	36684810	C-T	Hetero	INTERGENIC
SBS	Chr1	38831562	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g416100
SBS	Chr2	623169	C-T	Hetero	INTERGENIC
SBS	Chr2	1443238	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	34625237	C-A	Hetero	INTERGENIC
SBS	Chr3	20793929	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	23741875	G-T	Hetero	INTERGENIC
SBS	Chr4	9420259	G-A	Hetero	INTERGENIC
SBS	Chr4	14314456	G-A	Hetero	INTERGENIC
SBS	Chr5	9611535	G-C	Hetero	INTERGENIC
SBS	Chr7	8673478	C-A	Hetero	INTERGENIC
SBS	Chr7	11393995	G-A	Homo	INTERGENIC
SBS	Chr8	105141	T-A	Hetero	INTRON
SBS	Chr8	19091073	G-T	Homo	INTERGENIC
SBS	Chr8	21263100	G-T	Hetero	INTERGENIC
SBS	Chr9	15177837	G-T	Hetero	INTERGENIC
SBS	Chr10	8826885	G-T	Hetero	INTERGENIC
SBS	Chr10	17124732	G-A	Hetero	INTERGENIC
SBS	Chr10	20579937	T-C	Hetero	INTERGENIC
SBS	Chr12	5409219	G-A	Hetero	INTERGENIC
SBS	Chr12	15811628	G-A	Homo	INTERGENIC
SBS	Chr12	21932705	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	24028180	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	46433	46441	8
Deletion	Chr10	761513	761528	15
Deletion	Chr10	3542705	3542719	14
Deletion	Chr8	4133662	4133663	1
Deletion	Chr6	4681948	4681955	7
Deletion	Chr9	5245269	5245272	3
Deletion	Chr1	5271894	5271895	1
Deletion	Chr11	7365274	7365279	5
Deletion	Chr8	9655234	9655250	16
Deletion	Chr4	10753289	10753290	1
Deletion	Chr3	13187773	13187775	2
Deletion	Chr12	13670791	13670806	15
Deletion	Chr3	14153237	14153240	3
Deletion	Chr9	16785925	16785928	3
Deletion	Chr7	20062330	20062345	15	OsKitaake07g164700
Deletion	Chr6	21558874	21558886	12
Deletion	Chr3	23196921	23196922	1
Deletion	Chr8	23756728	23756729	1
Deletion	Chr11	24005551	24005554	3	OsKitaake11g193000
Deletion	Chr3	26158863	26158875	12
Deletion	Chr6	26395316	26395317	1	OsKitaake06g236900
Deletion	Chr3	28052904	28052908	4
Deletion	Chr4	33704549	33704558	9
Deletion	Chr4	35293068	35293079	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5185008	5430572
Inversion	Chr10	22917547	23483608	OsKitaake10g191500
Inversion	Chr10	22917565	23484176	OsKitaake10g191500
Inversion	Chr2	26610443	26948592	OsKitaake02g266000

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes