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| Mutant Information |
|---|
| Mutant Name | FN3769-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3769-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3482723 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 6365272 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21847555 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 43095908 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 44113530 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 9272683 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16348968 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 16528273 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18005310 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 24196904 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 2229042 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 3210917 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 7747522 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9329636 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 1381828 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 10150643 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 4086664 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 5797290 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 5797291 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 17563268 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13995283 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 11133604 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 13384463 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14822753 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 23166540 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 17965821 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 21237384 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 29134048 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 21356822 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 23954977 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 208323 | 208334 | 11 | OsKitaake05g002600 |
| Deletion | Chr6 | 2839509 | 2839525 | 16 | |
| Deletion | Chr6 | 4486749 | 4486755 | 6 | |
| Deletion | Chr8 | 6222473 | 6222480 | 7 | |
| Deletion | Chr7 | 8573020 | 8573027 | 7 | |
| Deletion | Chr6 | 10365571 | 10365575 | 4 | |
| Deletion | Chr6 | 13173725 | 13173734 | 9 | |
| Deletion | Chr9 | 15353576 | 15353577 | 1 | |
| Deletion | Chr10 | 17720001 | 17741000 | 20999 | 3 |
| Deletion | Chr8 | 21374799 | 21374822 | 23 | |
| Deletion | Chr11 | 25026273 | 25026291 | 18 | |
| Deletion | Chr5 | 26694051 | 26694054 | 3 | |
| Deletion | Chr2 | 32230239 | 32230244 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 2784062 | 2784064 | 1 | OsKitaake06g038000  |
| Insertion | Chr7 | 25932240 | 25932243 | 2 | |
| Insertion | Chr11 | 23771376 | 23771378 | 1 | |
| Insertion | Chr3 | 31983620 | 31983623 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 19204666 | 19222620 | |
| Inversion | Chr3 | 19204669 | 19222627 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 29342349 | Chr3 | 9578412 | OsKitaake03g130100 |