Search Kitaake

Mutant Information

Mutant Name	FN3770-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3770-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1970329 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g023608
SBS Chr1 12123263 G-A Hetero INTERGENIC
SBS Chr1 13084544 C-T Hetero INTRON
SBS Chr1 16099053 C-A Hetero INTERGENIC
SBS Chr1 40537962 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g440400
SBS Chr2 9514908 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g116300
SBS Chr2 25477961 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g251400
SBS Chr2 26715652 T-A Homo INTERGENIC
SBS Chr3 17630870 T-G Hetero INTERGENIC
SBS Chr3 22315051 G-A Hetero INTRON
SBS Chr4 4313826 G-A Homo INTERGENIC
SBS Chr4 9031543 T-C Homo INTRON
SBS Chr4 28070851 T-C Hetero INTERGENIC
SBS Chr4 30488518 G-A Hetero INTRON
SBS Chr5 7353212 A-G Hetero INTERGENIC
SBS Chr5 7968884 A-T Hetero INTRON
SBS Chr5 13114624 G-A Hetero INTRON
SBS Chr5 23145139 T-G Homo INTERGENIC
SBS Chr6 5034695 C-T Hetero INTERGENIC
SBS Chr7 7449593 C-T Homo INTERGENIC
SBS Chr7 17395114 C-A Homo INTRON
SBS Chr7 18748015 C-A Homo INTERGENIC
SBS Chr8 4869004 G-T Hetero INTERGENIC
SBS Chr8 4869005 G-T Hetero INTERGENIC
SBS Chr8 6125254 T-C Hetero INTERGENIC
SBS Chr9 6154334 C-T Hetero INTERGENIC
SBS Chr9 14959320 T-A Hetero INTERGENIC
SBS Chr9 21708974 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g191100
SBS Chr10 13144985 C-T Hetero INTERGENIC
SBS Chr11 3127266 T-C Homo INTERGENIC
SBS Chr12 18099494 G-A Hetero INTERGENIC
SBS Chr12 18099495 G-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1886185 1886187 2
Deletion Chr3 7251997 7251998 1
Deletion Chr8 8354685 8354691 6
Deletion Chr5 13906215 13906227 12
Deletion Chr10 14191107 14191113 6
Deletion Chr5 17194001 17233000 38999 2
Deletion Chr7 19790960 19790961 1 OsKitaake07g161600
Deletion Chr12 20323001 20343000 19999 4
Deletion Chr5 25665693 25665703 10
Deletion Chr2 33624470 33624476 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 5510999 5511002 2
Insertion Chr3 22948605 22948608 2
Insertion Chr11 23581046 23581048 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7679154 8206848
Inversion Chr12 7679156 8206849

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1970329	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g023608
SBS	Chr1	12123263	G-A	Hetero	INTERGENIC
SBS	Chr1	13084544	C-T	Hetero	INTRON
SBS	Chr1	16099053	C-A	Hetero	INTERGENIC
SBS	Chr1	40537962	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g440400
SBS	Chr2	9514908	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g116300
SBS	Chr2	25477961	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g251400
SBS	Chr2	26715652	T-A	Homo	INTERGENIC
SBS	Chr3	17630870	T-G	Hetero	INTERGENIC
SBS	Chr3	22315051	G-A	Hetero	INTRON
SBS	Chr4	4313826	G-A	Homo	INTERGENIC
SBS	Chr4	9031543	T-C	Homo	INTRON
SBS	Chr4	28070851	T-C	Hetero	INTERGENIC
SBS	Chr4	30488518	G-A	Hetero	INTRON
SBS	Chr5	7353212	A-G	Hetero	INTERGENIC
SBS	Chr5	7968884	A-T	Hetero	INTRON
SBS	Chr5	13114624	G-A	Hetero	INTRON
SBS	Chr5	23145139	T-G	Homo	INTERGENIC
SBS	Chr6	5034695	C-T	Hetero	INTERGENIC
SBS	Chr7	7449593	C-T	Homo	INTERGENIC
SBS	Chr7	17395114	C-A	Homo	INTRON
SBS	Chr7	18748015	C-A	Homo	INTERGENIC
SBS	Chr8	4869004	G-T	Hetero	INTERGENIC
SBS	Chr8	4869005	G-T	Hetero	INTERGENIC
SBS	Chr8	6125254	T-C	Hetero	INTERGENIC
SBS	Chr9	6154334	C-T	Hetero	INTERGENIC
SBS	Chr9	14959320	T-A	Hetero	INTERGENIC
SBS	Chr9	21708974	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g191100
SBS	Chr10	13144985	C-T	Hetero	INTERGENIC
SBS	Chr11	3127266	T-C	Homo	INTERGENIC
SBS	Chr12	18099494	G-A	Hetero	INTERGENIC
SBS	Chr12	18099495	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1886185	1886187	2
Deletion	Chr3	7251997	7251998	1
Deletion	Chr8	8354685	8354691	6
Deletion	Chr5	13906215	13906227	12
Deletion	Chr10	14191107	14191113	6
Deletion	Chr5	17194001	17233000	38999	2
Deletion	Chr7	19790960	19790961	1	OsKitaake07g161600
Deletion	Chr12	20323001	20343000	19999	4
Deletion	Chr5	25665693	25665703	10
Deletion	Chr2	33624470	33624476	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7679154	8206848
Inversion	Chr12	7679156	8206849

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes