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Mutant Information

Mutant Name	FN3771-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3771-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12682561 T-C Hetero UTR_5_PRIME
SBS Chr1 20368124 G-A Hetero INTERGENIC
SBS Chr1 44236702 T-C Homo INTRON
SBS Chr2 13300288 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 14468634 G-A Hetero INTERGENIC
SBS Chr2 34023044 A-C Homo INTERGENIC
SBS Chr3 23485253 C-T Hetero START_GAINED
SBS Chr3 31145641 T-A Homo INTERGENIC
SBS Chr3 31304369 C-T Homo INTERGENIC
SBS Chr4 17630321 T-A Hetero INTERGENIC
SBS Chr4 19436140 G-A Hetero INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr6 25025689 T-G Hetero INTERGENIC
SBS Chr6 26678935 C-T Hetero UTR_3_PRIME
SBS Chr6 28937362 T-G Hetero INTERGENIC
SBS Chr7 9961711 G-T Hetero INTRON
SBS Chr7 13612580 C-A Hetero INTERGENIC
SBS Chr7 27964390 T-C Homo INTRON
SBS Chr8 24942971 C-A Hetero INTERGENIC
SBS Chr9 6100866 G-A Hetero INTERGENIC
SBS Chr9 7185996 G-A Hetero INTERGENIC
SBS Chr9 7440676 G-C Hetero INTERGENIC
SBS Chr10 4741470 G-C Homo INTERGENIC
SBS Chr10 4819059 T-A Hetero INTERGENIC
SBS Chr11 18203792 G-T Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 4072482 4072484 2
Deletion Chr1 7086072 7086073 1
Deletion Chr5 8601767 8601771 4
Deletion Chr6 10473480 10473487 7
Deletion Chr9 12118351 12118359 8
Deletion Chr2 15530042 15530044 2
Deletion Chr7 23587980 23588003 23
Deletion Chr1 28562330 28562331 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37773048 37773051 2
Insertion Chr3 5013872 5013875 2
Insertion Chr11 10694042 10694045 2
Insertion Chr7 11037064 11037067 2
Insertion Chr11 8637653 8637728 74

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 2338968 2389319 OsKitaake06g030500
Inversion Chr6 2338971 2389321 OsKitaake06g030500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12682561	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	20368124	G-A	Hetero	INTERGENIC
SBS	Chr1	44236702	T-C	Homo	INTRON
SBS	Chr2	13300288	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	14468634	G-A	Hetero	INTERGENIC
SBS	Chr2	34023044	A-C	Homo	INTERGENIC
SBS	Chr3	23485253	C-T	Hetero	START_GAINED
SBS	Chr3	31145641	T-A	Homo	INTERGENIC
SBS	Chr3	31304369	C-T	Homo	INTERGENIC
SBS	Chr4	17630321	T-A	Hetero	INTERGENIC
SBS	Chr4	19436140	G-A	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr6	25025689	T-G	Hetero	INTERGENIC
SBS	Chr6	26678935	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	28937362	T-G	Hetero	INTERGENIC
SBS	Chr7	9961711	G-T	Hetero	INTRON
SBS	Chr7	13612580	C-A	Hetero	INTERGENIC
SBS	Chr7	27964390	T-C	Homo	INTRON
SBS	Chr8	24942971	C-A	Hetero	INTERGENIC
SBS	Chr9	6100866	G-A	Hetero	INTERGENIC
SBS	Chr9	7185996	G-A	Hetero	INTERGENIC
SBS	Chr9	7440676	G-C	Hetero	INTERGENIC
SBS	Chr10	4741470	G-C	Homo	INTERGENIC
SBS	Chr10	4819059	T-A	Hetero	INTERGENIC
SBS	Chr11	18203792	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4072482	4072484	2
Deletion	Chr1	7086072	7086073	1
Deletion	Chr5	8601767	8601771	4
Deletion	Chr6	10473480	10473487	7
Deletion	Chr9	12118351	12118359	8
Deletion	Chr2	15530042	15530044	2
Deletion	Chr7	23587980	23588003	23
Deletion	Chr1	28562330	28562331	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2338968	2389319	OsKitaake06g030500
Inversion	Chr6	2338971	2389321	OsKitaake06g030500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes