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Mutant Information

Mutant Name	FN3772-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3772-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20347331 A-T Homo INTERGENIC
SBS Chr1 20347341 A-T Homo INTERGENIC
SBS Chr1 29974334 C-T Hetero INTERGENIC
SBS Chr1 32993661 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 14669821 C-T Hetero INTERGENIC
SBS Chr2 26775267 G-A Homo INTERGENIC
SBS Chr2 27575381 G-A Homo INTERGENIC
SBS Chr2 33893289 T-A Homo INTERGENIC
SBS Chr3 25311378 T-C Hetero INTERGENIC
SBS Chr5 6327453 A-G Hetero INTRON
SBS Chr6 113051 T-A Homo INTERGENIC
SBS Chr6 3761658 T-G Homo NON_SYNONYMOUS_CODING OsKitaake06g052200
SBS Chr6 4868203 C-T Homo INTRON
SBS Chr6 7199755 T-A Hetero UTR_3_PRIME
SBS Chr6 8816298 T-C Homo INTERGENIC
SBS Chr6 11919571 T-A Hetero INTERGENIC
SBS Chr6 17275747 T-A Hetero INTERGENIC
SBS Chr6 18192946 G-A Hetero INTERGENIC
SBS Chr7 7174965 C-T Homo INTERGENIC
SBS Chr8 7369665 A-T Hetero INTERGENIC
SBS Chr8 8975784 T-C Hetero INTERGENIC
SBS Chr8 12520124 A-T Homo INTRON
SBS Chr8 27527715 T-C Hetero INTERGENIC
SBS Chr8 29078127 C-A Hetero INTERGENIC
SBS Chr8 29078128 C-A Hetero INTERGENIC
SBS Chr9 713995 T-C Homo INTERGENIC
SBS Chr9 5241939 T-G Homo INTERGENIC
SBS Chr10 3234531 G-A Hetero INTERGENIC
SBS Chr10 19578060 T-A Hetero INTRON
SBS Chr11 12275032 T-G Homo INTRON

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 116390 116401 11
Deletion Chr10 321118 321124 6
Deletion Chr4 1298754 1298769 15
Deletion Chr2 1601308 1601315 7
Deletion Chr3 3053001 3114000 60999 8
Deletion Chr3 3159354 3159372 18
Deletion Chr5 4431001 4521000 89999 10
Deletion Chr9 5296136 5296137 1
Deletion Chr9 6107238 6107240 2
Deletion Chr9 8149618 8149619 1 OsKitaake09g046200
Deletion Chr5 12418097 12418098 1
Deletion Chr7 14376362 14376366 4
Deletion Chr8 20092321 20092322 1
Deletion Chr8 23786776 23786787 11
Deletion Chr11 25617001 25668000 50999 8
Deletion Chr11 27093383 27093391 8
Deletion Chr2 28139632 28139638 6
Deletion Chr2 35361276 35361286 10
Deletion Chr2 35390344 35390354 10 OsKitaake02g371100

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10975182 10975185 2
Insertion Chr1 29427008 29427011 2
Insertion Chr4 17341699 17341701 1 OsKitaake04g085200
Insertion Chr7 17623716 17623719 2
Insertion Chr7 23448253 23448255 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 6637231 6788991
Inversion Chr4 6637235 6788993
Inversion Chr11 25617161 25674328
Inversion Chr11 25666179 25674328

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 18278654 Chr4 9276840 OsKitaake11g142200
Translocation Chr11 18281926 Chr4 9276832

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20347331	A-T	Homo	INTERGENIC
SBS	Chr1	20347341	A-T	Homo	INTERGENIC
SBS	Chr1	29974334	C-T	Hetero	INTERGENIC
SBS	Chr1	32993661	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	14669821	C-T	Hetero	INTERGENIC
SBS	Chr2	26775267	G-A	Homo	INTERGENIC
SBS	Chr2	27575381	G-A	Homo	INTERGENIC
SBS	Chr2	33893289	T-A	Homo	INTERGENIC
SBS	Chr3	25311378	T-C	Hetero	INTERGENIC
SBS	Chr5	6327453	A-G	Hetero	INTRON
SBS	Chr6	113051	T-A	Homo	INTERGENIC
SBS	Chr6	3761658	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g052200
SBS	Chr6	4868203	C-T	Homo	INTRON
SBS	Chr6	7199755	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	8816298	T-C	Homo	INTERGENIC
SBS	Chr6	11919571	T-A	Hetero	INTERGENIC
SBS	Chr6	17275747	T-A	Hetero	INTERGENIC
SBS	Chr6	18192946	G-A	Hetero	INTERGENIC
SBS	Chr7	7174965	C-T	Homo	INTERGENIC
SBS	Chr8	7369665	A-T	Hetero	INTERGENIC
SBS	Chr8	8975784	T-C	Hetero	INTERGENIC
SBS	Chr8	12520124	A-T	Homo	INTRON
SBS	Chr8	27527715	T-C	Hetero	INTERGENIC
SBS	Chr8	29078127	C-A	Hetero	INTERGENIC
SBS	Chr8	29078128	C-A	Hetero	INTERGENIC
SBS	Chr9	713995	T-C	Homo	INTERGENIC
SBS	Chr9	5241939	T-G	Homo	INTERGENIC
SBS	Chr10	3234531	G-A	Hetero	INTERGENIC
SBS	Chr10	19578060	T-A	Hetero	INTRON
SBS	Chr11	12275032	T-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	116390	116401	11
Deletion	Chr10	321118	321124	6
Deletion	Chr4	1298754	1298769	15
Deletion	Chr2	1601308	1601315	7
Deletion	Chr3	3053001	3114000	60999	8
Deletion	Chr3	3159354	3159372	18
Deletion	Chr5	4431001	4521000	89999	10
Deletion	Chr9	5296136	5296137	1
Deletion	Chr9	6107238	6107240	2
Deletion	Chr9	8149618	8149619	1	OsKitaake09g046200
Deletion	Chr5	12418097	12418098	1
Deletion	Chr7	14376362	14376366	4
Deletion	Chr8	20092321	20092322	1
Deletion	Chr8	23786776	23786787	11
Deletion	Chr11	25617001	25668000	50999	8
Deletion	Chr11	27093383	27093391	8
Deletion	Chr2	28139632	28139638	6
Deletion	Chr2	35361276	35361286	10
Deletion	Chr2	35390344	35390354	10	OsKitaake02g371100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6637231	6788991
Inversion	Chr4	6637235	6788993
Inversion	Chr11	25617161	25674328
Inversion	Chr11	25666179	25674328

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes