Search Kitaake

Mutant Information

Mutant Name	FN3773-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3773-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20798516 T-A Hetero INTERGENIC
SBS Chr1 33396065 A-G Hetero INTERGENIC
SBS Chr2 12438115 T-C Hetero INTERGENIC
SBS Chr2 23284211 A-G Homo INTERGENIC
SBS Chr2 35616230 A-C Homo INTERGENIC
SBS Chr3 16918723 C-T Hetero INTRON
SBS Chr4 36560717 A-T Hetero INTERGENIC
SBS Chr5 5025785 T-A Homo INTERGENIC
SBS Chr5 5025786 C-A Homo INTERGENIC
SBS Chr5 5033791 A-C Homo INTERGENIC
SBS Chr5 5132717 T-A Hetero INTERGENIC
SBS Chr5 12090809 G-A Hetero INTERGENIC
SBS Chr6 4988775 T-G Homo NON_SYNONYMOUS_CODING OsKitaake06g067100
SBS Chr6 16965949 T-A Hetero INTRON
SBS Chr6 19787030 T-C Hetero INTRON
SBS Chr6 21551613 G-T Hetero INTERGENIC
SBS Chr7 15244569 A-C Hetero INTERGENIC
SBS Chr7 17326556 T-G Hetero INTERGENIC
SBS Chr7 17783867 C-A Hetero INTERGENIC
SBS Chr8 3568893 A-T Homo INTERGENIC
SBS Chr8 14992483 G-A Hetero INTRON
SBS Chr9 4845122 C-T Hetero INTERGENIC
SBS Chr9 7105384 G-A Hetero INTERGENIC
SBS Chr9 8939654 T-A Homo INTERGENIC
SBS Chr10 3914630 T-C Hetero INTERGENIC
SBS Chr10 22573071 A-G Homo INTERGENIC
SBS Chr11 4514787 C-T Hetero INTERGENIC
SBS Chr11 18544779 C-G Hetero INTERGENIC
SBS Chr12 23328006 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 95879 95880 1
Deletion Chr10 2650441 2650442 1
Deletion Chr11 3971987 3971989 2
Deletion Chr5 4809346 4809357 11
Deletion Chr4 5441273 5441275 2
Deletion Chr1 5689532 5689536 4
Deletion Chr10 13264002 13264003 1
Deletion Chr1 17640027 17640039 12
Deletion Chr10 22971782 22971786 4
Deletion Chr7 23379662 23379672 10
Deletion Chr7 27220694 27220717 23
Deletion Chr1 36289001 36327000 37999 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 2669499 2669502 2
Insertion Chr5 22369061 22369065 3
Insertion Chr7 17162609 17162611 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 8189110 Chr3 20866066 OsKitaake08g075100
Translocation Chr8 8189521 Chr3 20866069 OsKitaake08g075100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20798516	T-A	Hetero	INTERGENIC
SBS	Chr1	33396065	A-G	Hetero	INTERGENIC
SBS	Chr2	12438115	T-C	Hetero	INTERGENIC
SBS	Chr2	23284211	A-G	Homo	INTERGENIC
SBS	Chr2	35616230	A-C	Homo	INTERGENIC
SBS	Chr3	16918723	C-T	Hetero	INTRON
SBS	Chr4	36560717	A-T	Hetero	INTERGENIC
SBS	Chr5	5025785	T-A	Homo	INTERGENIC
SBS	Chr5	5025786	C-A	Homo	INTERGENIC
SBS	Chr5	5033791	A-C	Homo	INTERGENIC
SBS	Chr5	5132717	T-A	Hetero	INTERGENIC
SBS	Chr5	12090809	G-A	Hetero	INTERGENIC
SBS	Chr6	4988775	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g067100
SBS	Chr6	16965949	T-A	Hetero	INTRON
SBS	Chr6	19787030	T-C	Hetero	INTRON
SBS	Chr6	21551613	G-T	Hetero	INTERGENIC
SBS	Chr7	15244569	A-C	Hetero	INTERGENIC
SBS	Chr7	17326556	T-G	Hetero	INTERGENIC
SBS	Chr7	17783867	C-A	Hetero	INTERGENIC
SBS	Chr8	3568893	A-T	Homo	INTERGENIC
SBS	Chr8	14992483	G-A	Hetero	INTRON
SBS	Chr9	4845122	C-T	Hetero	INTERGENIC
SBS	Chr9	7105384	G-A	Hetero	INTERGENIC
SBS	Chr9	8939654	T-A	Homo	INTERGENIC
SBS	Chr10	3914630	T-C	Hetero	INTERGENIC
SBS	Chr10	22573071	A-G	Homo	INTERGENIC
SBS	Chr11	4514787	C-T	Hetero	INTERGENIC
SBS	Chr11	18544779	C-G	Hetero	INTERGENIC
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	95879	95880	1
Deletion	Chr10	2650441	2650442	1
Deletion	Chr11	3971987	3971989	2
Deletion	Chr5	4809346	4809357	11
Deletion	Chr4	5441273	5441275	2
Deletion	Chr1	5689532	5689536	4
Deletion	Chr10	13264002	13264003	1
Deletion	Chr1	17640027	17640039	12
Deletion	Chr10	22971782	22971786	4
Deletion	Chr7	23379662	23379672	10
Deletion	Chr7	27220694	27220717	23
Deletion	Chr1	36289001	36327000	37999	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	8189110	Chr3	20866066	OsKitaake08g075100
Translocation	Chr8	8189521	Chr3	20866069	OsKitaake08g075100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes