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| Mutant Information |
|---|
| Mutant Name | FN3774-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3774-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 31120837 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 4929485 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14729678 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 19033225 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 23254511 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g227400 |
| SBS | Chr2 | 25722739 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25790473 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31284440 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1898598 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 4038764 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17426087 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g086200 |
| SBS | Chr5 | 11903131 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13829315 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15344124 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g117202 |
| SBS | Chr6 | 18310343 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 22150737 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29114064 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18782315 | C-A | Hetero | INTRON | |
| SBS | Chr7 | 20058077 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20058086 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 24167419 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4935271 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6764453 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 9714401 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g059100 |
| SBS | Chr9 | 10220916 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 4938137 | T-A | Homo | INTRON | |
| SBS | Chr10 | 7044016 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 7044018 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 7044019 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 11923333 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1974291 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 8364997 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 8507286 | G-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 3044971 | 3044974 | 3 | |
| Deletion | Chr11 | 3716254 | 3716262 | 8 | |
| Deletion | Chr9 | 6780122 | 6780135 | 13 | |
| Deletion | Chr11 | 7492294 | 7492306 | 12 | |
| Deletion | Chr9 | 7583057 | 7583058 | 1 | |
| Deletion | Chr10 | 12065001 | 12545000 | 479999 | 52 |
| Deletion | Chr11 | 13608113 | 13608114 | 1 | |
| Deletion | Chr5 | 14409512 | 14409517 | 5 | OsKitaake05g110000 |
| Deletion | Chr2 | 24425106 | 24425107 | 1 | |
| Deletion | Chr8 | 24853912 | 24853918 | 6 | |
| Deletion | Chr1 | 25939768 | 25939770 | 2 | |
| Deletion | Chr12 | 26459900 | 26459901 | 1 | |
| Deletion | Chr1 | 31753736 | 31753742 | 6 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 28353766 | Chr1 | 7422706 | OsKitaake06g258900 |
| Translocation | Chr6 | 28354067 | Chr1 | 7422701 | OsKitaake06g258900 |