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| Mutant Information |
|---|
| Mutant Name | FN3775-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3775-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23118517 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 27967069 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 28322317 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 27110222 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 33186710 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14692987 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 18927472 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 20173620 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 20173621 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 20173645 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 7023100 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 20025005 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7538321 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 18106203 | G-A | Homo | INTRON | |
| SBS | Chr9 | 785479 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 3928610 | C-G | Hetero | INTRON | |
| SBS | Chr10 | 8999428 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 13145000 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 1158448 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 11503379 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 16360069 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 18066257 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 19878791 | G-A | Homo | INTRON | |
| SBS | Chr11 | 23389019 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 29511888 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g243000 |
| SBS | Chr12 | 16165279 | G-A | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1261556 | 1261566 | 10 | |
| Deletion | Chr11 | 5578657 | 5578660 | 3 | |
| Deletion | Chr11 | 7809649 | 7809655 | 6 | |
| Deletion | Chr8 | 7863356 | 7863361 | 5 | |
| Deletion | Chr8 | 8633298 | 8633301 | 3 | |
| Deletion | Chr12 | 12869649 | 12869650 | 1 | |
| Deletion | Chr11 | 17058362 | 17058425 | 63 | OsKitaake11g133400 |
| Deletion | Chr2 | 26641001 | 26695000 | 53999 | 7 |
| Deletion | Chr1 | 40395476 | 40395480 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 19379784 | 19379786 | 1 | |
| Insertion | Chr7 | 12005937 | 12005940 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 28310735 | 28571854 |