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| Mutant Information |
|---|
| Mutant Name | FN3776-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3776-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23998603 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 27272212 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31003371 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34910253 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 34910254 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 41670439 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 43963846 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 44190055 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 8366137 | T-A | Homo | INTRON | |
| SBS | Chr3 | 11703271 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 13551572 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 25237014 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 25237015 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g266900 |
| SBS | Chr3 | 31373880 | A-C | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr4 | 9659636 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 15129571 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 26515408 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 32729443 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3695270 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 15638128 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 7037607 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 26423162 | G-A | Homo | INTRON | |
| SBS | Chr7 | 8907674 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 10829503 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12688021 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 13067394 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 13315152 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13315153 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15735498 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 22648642 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7521248 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 12707867 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 20320288 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g154700 |
| SBS | Chr11 | 1249557 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14662964 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 29515440 | G-T | Homo | UTR_5_PRIME | |
| SBS | Chr12 | 10746294 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 21584592 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 25919118 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g214200 |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 3224712 | 3224716 | 4 | OsKitaake11g044500 |
| Deletion | Chr7 | 8291404 | 8291416 | 12 | |
| Deletion | Chr9 | 10449527 | 10449529 | 2 | |
| Deletion | Chr6 | 17641174 | 17641175 | 1 | |
| Deletion | Chr5 | 18543352 | 18543355 | 3 | |
| Deletion | Chr8 | 20972103 | 20972113 | 10 | |
| Deletion | Chr5 | 27581894 | 27581900 | 6 | |
| Deletion | Chr1 | 28643283 | 28643293 | 10 | OsKitaake01g277700 |
| Deletion | Chr3 | 29104399 | 29104400 | 1 | OsKitaake03g302300 |
| Deletion | Chr1 | 33075894 | 33075895 | 1 | OsKitaake01g337400 |
| Deletion | Chr1 | 36267373 | 36267377 | 4 | OsKitaake01g384800 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 4471064 | 4471067 | 2 | |
| Insertion | Chr7 | 26238684 | 26238687 | 2 | |
| Insertion | Chr12 | 17014680 | 17014682 | 1 |