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Mutant Information

Mutant Name	FN3777-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3777-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5168914 C-T Homo INTERGENIC
SBS Chr1 7173881 C-G Homo NON_SYNONYMOUS_CODING OsKitaake01g089500
SBS Chr1 26731480 G-A Hetero INTERGENIC
SBS Chr1 44031800 A-G Homo UTR_3_PRIME
SBS Chr2 19041200 A-G Homo INTERGENIC
SBS Chr2 30439659 A-T Hetero INTERGENIC
SBS Chr3 23078949 G-A Hetero INTERGENIC
SBS Chr3 32896956 T-A Hetero INTRON
SBS Chr3 32896957 A-C Hetero INTRON
SBS Chr3 33216859 T-A Hetero INTERGENIC
SBS Chr4 25566484 T-C Homo INTRON
SBS Chr4 30727963 G-T Hetero INTERGENIC
SBS Chr4 34641374 T-C Hetero INTRON
SBS Chr5 12421476 C-T Hetero INTERGENIC
SBS Chr5 14702245 A-C Hetero INTERGENIC
SBS Chr5 15052638 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g114700
SBS Chr5 22041841 G-A Homo INTERGENIC
SBS Chr6 28132 T-A Hetero INTERGENIC
SBS Chr6 7595888 C-T Hetero INTRON
SBS Chr6 11835403 C-T Hetero INTERGENIC
SBS Chr7 20048655 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g164400
SBS Chr8 5260519 T-A Hetero INTERGENIC
SBS Chr9 8104703 G-A Hetero INTRON
SBS Chr9 8104704 A-T Hetero INTRON
SBS Chr9 19427895 A-T Hetero INTERGENIC
SBS Chr10 872104 A-T Homo INTERGENIC
SBS Chr10 2670999 T-C Hetero INTRON
SBS Chr10 5425699 G-A Hetero INTERGENIC
SBS Chr10 7484111 T-G Hetero INTERGENIC
SBS Chr10 15394357 C-A Homo INTERGENIC
SBS Chr11 113412 G-A Hetero INTERGENIC
SBS Chr11 21940010 C-T Hetero INTERGENIC
SBS Chr11 27291475 G-C Hetero INTERGENIC
SBS Chr12 14527062 C-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 395039 395048 9
Deletion Chr1 7996282 7996285 3
Deletion Chr5 10119539 10119541 2 OsKitaake05g089901
Deletion Chr1 10394653 10394655 2
Deletion Chr1 10662001 10685000 22999 3
Deletion Chr12 11818819 11818822 3
Deletion Chr3 12009584 12009598 14 OsKitaake03g163300
Deletion Chr12 12474001 12535000 60999 6
Deletion Chr5 18425441 18425442 1
Deletion Chr6 19030880 19030893 13
Deletion Chr12 19930110 19930137 27
Deletion Chr10 20572466 20572474 8
Deletion Chr10 22434919 22434939 20
Deletion Chr6 22879378 22879381 3
Deletion Chr11 24992001 25499000 506999 46
Deletion Chr12 27023519 27023840 321

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 7124345 7124347 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 2676424 2797730
Inversion Chr7 18722562 19038027 OsKitaake07g152500

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2676423 Chr4 17370853
Translocation Chr10 2797728 Chr4 17417363
Translocation Chr12 8542397 Chr2 3461571
Translocation Chr12 8542633 Chr2 3461570
Translocation Chr6 17333915 Chr4 35749001
Translocation Chr6 17335075 Chr4 34482861 OsKitaake04g287000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5168914	C-T	Homo	INTERGENIC
SBS	Chr1	7173881	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g089500
SBS	Chr1	26731480	G-A	Hetero	INTERGENIC
SBS	Chr1	44031800	A-G	Homo	UTR_3_PRIME
SBS	Chr2	19041200	A-G	Homo	INTERGENIC
SBS	Chr2	30439659	A-T	Hetero	INTERGENIC
SBS	Chr3	23078949	G-A	Hetero	INTERGENIC
SBS	Chr3	32896956	T-A	Hetero	INTRON
SBS	Chr3	32896957	A-C	Hetero	INTRON
SBS	Chr3	33216859	T-A	Hetero	INTERGENIC
SBS	Chr4	25566484	T-C	Homo	INTRON
SBS	Chr4	30727963	G-T	Hetero	INTERGENIC
SBS	Chr4	34641374	T-C	Hetero	INTRON
SBS	Chr5	12421476	C-T	Hetero	INTERGENIC
SBS	Chr5	14702245	A-C	Hetero	INTERGENIC
SBS	Chr5	15052638	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g114700
SBS	Chr5	22041841	G-A	Homo	INTERGENIC
SBS	Chr6	28132	T-A	Hetero	INTERGENIC
SBS	Chr6	7595888	C-T	Hetero	INTRON
SBS	Chr6	11835403	C-T	Hetero	INTERGENIC
SBS	Chr7	20048655	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g164400
SBS	Chr8	5260519	T-A	Hetero	INTERGENIC
SBS	Chr9	8104703	G-A	Hetero	INTRON
SBS	Chr9	8104704	A-T	Hetero	INTRON
SBS	Chr9	19427895	A-T	Hetero	INTERGENIC
SBS	Chr10	872104	A-T	Homo	INTERGENIC
SBS	Chr10	2670999	T-C	Hetero	INTRON
SBS	Chr10	5425699	G-A	Hetero	INTERGENIC
SBS	Chr10	7484111	T-G	Hetero	INTERGENIC
SBS	Chr10	15394357	C-A	Homo	INTERGENIC
SBS	Chr11	113412	G-A	Hetero	INTERGENIC
SBS	Chr11	21940010	C-T	Hetero	INTERGENIC
SBS	Chr11	27291475	G-C	Hetero	INTERGENIC
SBS	Chr12	14527062	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	395039	395048	9
Deletion	Chr1	7996282	7996285	3
Deletion	Chr5	10119539	10119541	2	OsKitaake05g089901
Deletion	Chr1	10394653	10394655	2
Deletion	Chr1	10662001	10685000	22999	3
Deletion	Chr12	11818819	11818822	3
Deletion	Chr3	12009584	12009598	14	OsKitaake03g163300
Deletion	Chr12	12474001	12535000	60999	6
Deletion	Chr5	18425441	18425442	1
Deletion	Chr6	19030880	19030893	13
Deletion	Chr12	19930110	19930137	27
Deletion	Chr10	20572466	20572474	8
Deletion	Chr10	22434919	22434939	20
Deletion	Chr6	22879378	22879381	3
Deletion	Chr11	24992001	25499000	506999	46
Deletion	Chr12	27023519	27023840	321

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2676424	2797730
Inversion	Chr7	18722562	19038027	OsKitaake07g152500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes