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Mutant Information

Mutant Name	FN3778-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3778-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4647277 G-A Hetero INTERGENIC
SBS Chr1 5702123 T-A Hetero INTERGENIC
SBS Chr1 7848115 C-T Hetero INTERGENIC
SBS Chr1 12697802 G-A Hetero INTRON
SBS Chr1 14064416 A-T Hetero INTERGENIC
SBS Chr1 21492607 C-T Homo INTERGENIC
SBS Chr1 30876171 C-T Hetero INTERGENIC
SBS Chr2 10396282 G-A Hetero INTERGENIC
SBS Chr2 10396283 G-A Hetero INTERGENIC
SBS Chr2 10396446 C-A Hetero INTERGENIC
SBS Chr2 17927660 G-A Hetero INTERGENIC
SBS Chr3 3148748 A-C Hetero INTERGENIC
SBS Chr3 5703574 A-G Hetero UTR_5_PRIME
SBS Chr3 26538219 G-T Hetero INTERGENIC
SBS Chr3 26538221 C-T Hetero INTERGENIC
SBS Chr3 26538226 C-G Hetero INTERGENIC
SBS Chr3 31522001 C-T Hetero INTERGENIC
SBS Chr3 34147037 A-C Hetero INTERGENIC
SBS Chr3 35520355 T-A Hetero INTERGENIC
SBS Chr3 36782791 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g410300
SBS Chr4 1342971 T-C Hetero INTERGENIC
SBS Chr4 3533298 A-T Hetero INTERGENIC
SBS Chr5 6527911 C-G Homo INTERGENIC
SBS Chr5 29971191 G-A Hetero INTERGENIC
SBS Chr6 8462907 C-T Hetero INTERGENIC
SBS Chr6 23649513 G-A Hetero INTERGENIC
SBS Chr6 25360217 C-A Hetero INTERGENIC
SBS Chr7 22698147 G-C Hetero INTRON
SBS Chr8 12758141 G-T Hetero INTERGENIC
SBS Chr9 8311815 A-C Hetero INTERGENIC
SBS Chr9 8317363 C-T Hetero INTERGENIC
SBS Chr9 8317368 T-A Hetero INTERGENIC
SBS Chr9 8321408 T-C Hetero INTERGENIC
SBS Chr9 9198577 A-T Hetero INTERGENIC
SBS Chr10 18909221 C-T Hetero INTERGENIC
SBS Chr11 4601414 A-G Hetero INTERGENIC
SBS Chr11 7175206 C-T Hetero INTRON
SBS Chr11 20958847 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g165300

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2521764 2521768 4
Deletion Chr12 3388812 3388821 9 OsKitaake12g048000
Deletion Chr5 3719989 3719991 2
Deletion Chr1 6031001 6214000 182999 20
Deletion Chr6 7852294 7852297 3
Deletion Chr8 9637315 9637316 1
Deletion Chr3 13084162 13084183 21
Deletion Chr9 13633654 13633663 9
Deletion Chr5 13876224 13876231 7
Deletion Chr7 15410308 15410310 2
Deletion Chr5 18922001 19033000 110999 12
Deletion Chr11 20471591 20471599 8
Deletion Chr7 20905534 20905536 2
Deletion Chr7 21205884 21205891 7
Deletion Chr1 21491663 21491665 2
Deletion Chr11 22305394 22305396 2
Deletion Chr5 22431404 22431418 14
Deletion Chr12 23068886 23068895 9
Deletion Chr3 28172525 28172528 3
Deletion Chr4 28761517 28761519 2
Deletion Chr4 33660528 33660529 1
Deletion Chr3 34326939 34326940 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 7278349 7278351 1
Insertion Chr5 30189657 30189660 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 14138142 14139051
Inversion Chr7 14138146 14142501 OsKitaake07g122200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8731992 Chr3 22042852
Translocation Chr8 16969367 Chr1 596658 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4647277	G-A	Hetero	INTERGENIC
SBS	Chr1	5702123	T-A	Hetero	INTERGENIC
SBS	Chr1	7848115	C-T	Hetero	INTERGENIC
SBS	Chr1	12697802	G-A	Hetero	INTRON
SBS	Chr1	14064416	A-T	Hetero	INTERGENIC
SBS	Chr1	21492607	C-T	Homo	INTERGENIC
SBS	Chr1	30876171	C-T	Hetero	INTERGENIC
SBS	Chr2	10396282	G-A	Hetero	INTERGENIC
SBS	Chr2	10396283	G-A	Hetero	INTERGENIC
SBS	Chr2	10396446	C-A	Hetero	INTERGENIC
SBS	Chr2	17927660	G-A	Hetero	INTERGENIC
SBS	Chr3	3148748	A-C	Hetero	INTERGENIC
SBS	Chr3	5703574	A-G	Hetero	UTR_5_PRIME
SBS	Chr3	26538219	G-T	Hetero	INTERGENIC
SBS	Chr3	26538221	C-T	Hetero	INTERGENIC
SBS	Chr3	26538226	C-G	Hetero	INTERGENIC
SBS	Chr3	31522001	C-T	Hetero	INTERGENIC
SBS	Chr3	34147037	A-C	Hetero	INTERGENIC
SBS	Chr3	35520355	T-A	Hetero	INTERGENIC
SBS	Chr3	36782791	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g410300
SBS	Chr4	1342971	T-C	Hetero	INTERGENIC
SBS	Chr4	3533298	A-T	Hetero	INTERGENIC
SBS	Chr5	6527911	C-G	Homo	INTERGENIC
SBS	Chr5	29971191	G-A	Hetero	INTERGENIC
SBS	Chr6	8462907	C-T	Hetero	INTERGENIC
SBS	Chr6	23649513	G-A	Hetero	INTERGENIC
SBS	Chr6	25360217	C-A	Hetero	INTERGENIC
SBS	Chr7	22698147	G-C	Hetero	INTRON
SBS	Chr8	12758141	G-T	Hetero	INTERGENIC
SBS	Chr9	8311815	A-C	Hetero	INTERGENIC
SBS	Chr9	8317363	C-T	Hetero	INTERGENIC
SBS	Chr9	8317368	T-A	Hetero	INTERGENIC
SBS	Chr9	8321408	T-C	Hetero	INTERGENIC
SBS	Chr9	9198577	A-T	Hetero	INTERGENIC
SBS	Chr10	18909221	C-T	Hetero	INTERGENIC
SBS	Chr11	4601414	A-G	Hetero	INTERGENIC
SBS	Chr11	7175206	C-T	Hetero	INTRON
SBS	Chr11	20958847	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g165300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2521764	2521768	4
Deletion	Chr12	3388812	3388821	9	OsKitaake12g048000
Deletion	Chr5	3719989	3719991	2
Deletion	Chr1	6031001	6214000	182999	20
Deletion	Chr6	7852294	7852297	3
Deletion	Chr8	9637315	9637316	1
Deletion	Chr3	13084162	13084183	21
Deletion	Chr9	13633654	13633663	9
Deletion	Chr5	13876224	13876231	7
Deletion	Chr7	15410308	15410310	2
Deletion	Chr5	18922001	19033000	110999	12
Deletion	Chr11	20471591	20471599	8
Deletion	Chr7	20905534	20905536	2
Deletion	Chr7	21205884	21205891	7
Deletion	Chr1	21491663	21491665	2
Deletion	Chr11	22305394	22305396	2
Deletion	Chr5	22431404	22431418	14
Deletion	Chr12	23068886	23068895	9
Deletion	Chr3	28172525	28172528	3
Deletion	Chr4	28761517	28761519	2
Deletion	Chr4	33660528	33660529	1
Deletion	Chr3	34326939	34326940	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14138142	14139051
Inversion	Chr7	14138146	14142501	OsKitaake07g122200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes