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Mutant Information

Mutant Name	FN3779-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3779-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12695932 G-A Homo INTRON
SBS Chr1 21966438 C-G Homo INTRON
SBS Chr1 35164257 G-A Homo INTRON
SBS Chr1 41101488 T-C Hetero INTERGENIC
SBS Chr2 11163488 A-T Hetero INTRON
SBS Chr2 16236010 C-T Hetero INTERGENIC
SBS Chr2 24523678 C-T Hetero INTERGENIC
SBS Chr3 22244204 G-T Hetero INTERGENIC
SBS Chr3 33353300 A-G Homo INTERGENIC
SBS Chr4 5778669 C-T Homo INTERGENIC
SBS Chr4 6885156 G-A Hetero INTERGENIC
SBS Chr4 24413634 G-A Hetero INTERGENIC
SBS Chr5 2569365 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g029000
SBS Chr5 10966111 G-A Homo INTERGENIC
SBS Chr5 13235850 T-C Homo INTERGENIC
SBS Chr5 22769340 T-C Homo INTERGENIC
SBS Chr6 7962025 G-C Homo INTERGENIC
SBS Chr6 14622534 A-C Homo INTERGENIC
SBS Chr6 28012337 G-A Homo INTERGENIC
SBS Chr6 29543501 G-A Hetero INTRON
SBS Chr6 30482771 A-C Hetero UTR_3_PRIME
SBS Chr7 3502381 A-T Hetero INTERGENIC
SBS Chr7 9350576 G-A Hetero INTERGENIC
SBS Chr8 5990062 G-A Hetero INTERGENIC
SBS Chr8 24979169 A-T Homo INTERGENIC
SBS Chr9 9872001 G-A Homo INTERGENIC
SBS Chr9 10681331 C-T Hetero INTERGENIC
SBS Chr9 14998717 G-A Homo INTERGENIC
SBS Chr9 22091832 G-T Homo NON_SYNONYMOUS_CODING OsKitaake09g198400
SBS Chr10 551019 T-A Hetero INTERGENIC
SBS Chr11 3045589 G-A Homo INTERGENIC
SBS Chr12 1002681 G-A Homo UTR_5_PRIME

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1144716 1144717 1
Deletion Chr11 3045539 3045565 26
Deletion Chr6 7773070 7773079 9
Deletion Chr6 9874302 9874303 1
Deletion Chr6 9887516 9887517 1
Deletion Chr6 9910330 9910346 16
Deletion Chr7 10192616 10192627 11
Deletion Chr7 14500173 14500176 3
Deletion Chr2 15336229 15336253 24
Deletion Chr6 16445651 16445652 1
Deletion Chr6 17137365 17137370 5
Deletion Chr4 17261191 17261209 18
Deletion Chr4 18231058 18231060 2
Deletion Chr1 29017013 29017015 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 28456327 28456330 2
Insertion Chr10 20248201 20248204 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 54383 64949
Inversion Chr11 54407 64958
Inversion Chr3 17328692 18230169 OsKitaake03g222200
Inversion Chr3 17328693 18230173 OsKitaake03g222200
Inversion Chr8 20460099 20485340
Inversion Chr11 28855270 29628452 OsKitaake11g236200
Inversion Chr11 28855276 29628469 OsKitaake11g236200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 21264642 Chr1 24614774 2
Translocation Chr7 21264652 Chr1 24614104 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr1	21966438	C-G	Homo	INTRON
SBS	Chr1	35164257	G-A	Homo	INTRON
SBS	Chr1	41101488	T-C	Hetero	INTERGENIC
SBS	Chr2	11163488	A-T	Hetero	INTRON
SBS	Chr2	16236010	C-T	Hetero	INTERGENIC
SBS	Chr2	24523678	C-T	Hetero	INTERGENIC
SBS	Chr3	22244204	G-T	Hetero	INTERGENIC
SBS	Chr3	33353300	A-G	Homo	INTERGENIC
SBS	Chr4	5778669	C-T	Homo	INTERGENIC
SBS	Chr4	6885156	G-A	Hetero	INTERGENIC
SBS	Chr4	24413634	G-A	Hetero	INTERGENIC
SBS	Chr5	2569365	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g029000
SBS	Chr5	10966111	G-A	Homo	INTERGENIC
SBS	Chr5	13235850	T-C	Homo	INTERGENIC
SBS	Chr5	22769340	T-C	Homo	INTERGENIC
SBS	Chr6	7962025	G-C	Homo	INTERGENIC
SBS	Chr6	14622534	A-C	Homo	INTERGENIC
SBS	Chr6	28012337	G-A	Homo	INTERGENIC
SBS	Chr6	29543501	G-A	Hetero	INTRON
SBS	Chr6	30482771	A-C	Hetero	UTR_3_PRIME
SBS	Chr7	3502381	A-T	Hetero	INTERGENIC
SBS	Chr7	9350576	G-A	Hetero	INTERGENIC
SBS	Chr8	5990062	G-A	Hetero	INTERGENIC
SBS	Chr8	24979169	A-T	Homo	INTERGENIC
SBS	Chr9	9872001	G-A	Homo	INTERGENIC
SBS	Chr9	10681331	C-T	Hetero	INTERGENIC
SBS	Chr9	14998717	G-A	Homo	INTERGENIC
SBS	Chr9	22091832	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g198400
SBS	Chr10	551019	T-A	Hetero	INTERGENIC
SBS	Chr11	3045589	G-A	Homo	INTERGENIC
SBS	Chr12	1002681	G-A	Homo	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1144716	1144717	1
Deletion	Chr11	3045539	3045565	26
Deletion	Chr6	7773070	7773079	9
Deletion	Chr6	9874302	9874303	1
Deletion	Chr6	9887516	9887517	1
Deletion	Chr6	9910330	9910346	16
Deletion	Chr7	10192616	10192627	11
Deletion	Chr7	14500173	14500176	3
Deletion	Chr2	15336229	15336253	24
Deletion	Chr6	16445651	16445652	1
Deletion	Chr6	17137365	17137370	5
Deletion	Chr4	17261191	17261209	18
Deletion	Chr4	18231058	18231060	2
Deletion	Chr1	29017013	29017015	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	54383	64949
Inversion	Chr11	54407	64958
Inversion	Chr3	17328692	18230169	OsKitaake03g222200
Inversion	Chr3	17328693	18230173	OsKitaake03g222200
Inversion	Chr8	20460099	20485340
Inversion	Chr11	28855270	29628452	OsKitaake11g236200
Inversion	Chr11	28855276	29628469	OsKitaake11g236200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes