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| Mutant Information |
|---|
| Mutant Name | FN3780-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3780-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 34035450 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 26288151 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 1336175 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 1336176 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7586110 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 7586111 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 12633892 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 13883142 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14208330 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 18517546 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 33615539 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 2672010 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8011901 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14908611 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22338417 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 32685936 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 7135902 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 20610674 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 20916175 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 21145577 | A-C | Homo | INTERGENIC | |
| SBS | Chr7 | 22714535 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28059111 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 6042761 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6571365 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8581098 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 27172477 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 2622858 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5569023 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13477321 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 20914041 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 259140 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2473948 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3230592 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17627961 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9163929 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 14291272 | T-C | Homo | INTRON | |
| SBS | Chr11 | 15969531 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 21095637 | T-A | Homo | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 12534942 | 12534956 | 14 | |
| Deletion | Chr7 | 19375234 | 19375236 | 2 | |
| Deletion | Chr5 | 20927221 | 20927229 | 8 | |
| Deletion | Chr1 | 22199385 | 22199395 | 10 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 11613327 | 11613329 | 1 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 6159665 | 6245138 | |
| Inversion | Chr5 | 7457047 | 7637353 | 2 |
| Inversion | Chr5 | 7457054 | 7637376 | 2 |
| Inversion | Chr3 | 15187762 | 15213879 | |
| Inversion | Chr3 | 15187771 | 15213881 | |
| Inversion | Chr8 | 21938317 | 22338179 | OsKitaake08g170400 |
| Inversion | Chr8 | 21938327 | 22338176 | OsKitaake08g170400 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 5787735 | Chr2 | 10475008 | OsKitaake12g069900 |
| Translocation | Chr12 | 5790308 | Chr2 | 10475003 | OsKitaake12g070000 |