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Mutant Information

Mutant Name	FN3781-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3781-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17457374 T-A Hetero INTERGENIC
SBS Chr2 34544809 C-A Homo INTERGENIC
SBS Chr3 17379016 T-G Homo INTERGENIC
SBS Chr3 17941064 G-T Hetero INTERGENIC
SBS Chr4 14753696 G-A Hetero INTERGENIC
SBS Chr4 27756158 T-A Hetero INTRON
SBS Chr5 2258284 C-T Homo INTERGENIC
SBS Chr5 4267613 T-A Hetero INTERGENIC
SBS Chr5 9515953 G-A Hetero INTERGENIC
SBS Chr5 13994543 C-T Hetero INTERGENIC
SBS Chr5 20431037 C-T Hetero INTERGENIC
SBS Chr6 4224805 G-A Homo SYNONYMOUS_CODING
SBS Chr6 5759848 A-T Hetero INTRON
SBS Chr7 15390782 C-A Homo INTERGENIC
SBS Chr8 13237086 A-C Hetero INTERGENIC
SBS Chr8 20210389 G-C Homo INTERGENIC
SBS Chr8 20210395 G-A Homo INTERGENIC
SBS Chr8 20210396 G-A Homo INTERGENIC
SBS Chr9 11000269 G-A Homo INTERGENIC
SBS Chr9 11379480 C-T Homo INTERGENIC
SBS Chr9 20875917 A-G Homo INTERGENIC
SBS Chr10 20629517 A-C Hetero INTERGENIC
SBS Chr11 28921503 C-G Hetero INTERGENIC
SBS Chr12 20185411 T-C Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 106148 106149 1
Deletion Chr7 1719338 1719345 7
Deletion Chr1 3818001 4067000 248999 36
Deletion Chr9 7311596 7311603 7
Deletion Chr11 12456290 12456291 1
Deletion Chr11 13982145 13982147 2
Deletion Chr2 14135164 14135166 2
Deletion Chr12 14210048 14210050 2
Deletion Chr11 14339841 14339842 1
Deletion Chr6 17272001 17277000 4999
Deletion Chr5 18760267 18760268 1
Deletion Chr5 19676402 19676405 3
Deletion Chr12 21119483 21119485 2
Deletion Chr10 21556272 21556274 2
Deletion Chr1 21788083 21788089 6
Deletion Chr9 21914857 21914870 13
Deletion Chr9 22412225 22412226 1
Deletion Chr3 24462989 24462993 4
Deletion Chr6 27120836 27120848 12
Deletion Chr11 28923001 28941000 17999
Deletion Chr4 32238300 32238305 5 OsKitaake04g256600
Deletion Chr4 35280001 35329000 48999 3
Deletion Chr4 35755461 35755471 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20847101 20847104 2
Insertion Chr3 3924524 3924527 2
Insertion Chr12 25110941 25110945 3
Insertion Chr5 30243939 30243941 1
Insertion Chr8 13474384 13474391 6

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3668515 Chr1 4066664 OsKitaake01g054700
Translocation Chr12 3681309 Chr1 3821634 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17457374	T-A	Hetero	INTERGENIC
SBS	Chr2	34544809	C-A	Homo	INTERGENIC
SBS	Chr3	17379016	T-G	Homo	INTERGENIC
SBS	Chr3	17941064	G-T	Hetero	INTERGENIC
SBS	Chr4	14753696	G-A	Hetero	INTERGENIC
SBS	Chr4	27756158	T-A	Hetero	INTRON
SBS	Chr5	2258284	C-T	Homo	INTERGENIC
SBS	Chr5	4267613	T-A	Hetero	INTERGENIC
SBS	Chr5	9515953	G-A	Hetero	INTERGENIC
SBS	Chr5	13994543	C-T	Hetero	INTERGENIC
SBS	Chr5	20431037	C-T	Hetero	INTERGENIC
SBS	Chr6	4224805	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	5759848	A-T	Hetero	INTRON
SBS	Chr7	15390782	C-A	Homo	INTERGENIC
SBS	Chr8	13237086	A-C	Hetero	INTERGENIC
SBS	Chr8	20210389	G-C	Homo	INTERGENIC
SBS	Chr8	20210395	G-A	Homo	INTERGENIC
SBS	Chr8	20210396	G-A	Homo	INTERGENIC
SBS	Chr9	11000269	G-A	Homo	INTERGENIC
SBS	Chr9	11379480	C-T	Homo	INTERGENIC
SBS	Chr9	20875917	A-G	Homo	INTERGENIC
SBS	Chr10	20629517	A-C	Hetero	INTERGENIC
SBS	Chr11	28921503	C-G	Hetero	INTERGENIC
SBS	Chr12	20185411	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	106148	106149	1
Deletion	Chr7	1719338	1719345	7
Deletion	Chr1	3818001	4067000	248999	36
Deletion	Chr9	7311596	7311603	7
Deletion	Chr11	12456290	12456291	1
Deletion	Chr11	13982145	13982147	2
Deletion	Chr2	14135164	14135166	2
Deletion	Chr12	14210048	14210050	2
Deletion	Chr11	14339841	14339842	1
Deletion	Chr6	17272001	17277000	4999
Deletion	Chr5	18760267	18760268	1
Deletion	Chr5	19676402	19676405	3
Deletion	Chr12	21119483	21119485	2
Deletion	Chr10	21556272	21556274	2
Deletion	Chr1	21788083	21788089	6
Deletion	Chr9	21914857	21914870	13
Deletion	Chr9	22412225	22412226	1
Deletion	Chr3	24462989	24462993	4
Deletion	Chr6	27120836	27120848	12
Deletion	Chr11	28923001	28941000	17999
Deletion	Chr4	32238300	32238305	5	OsKitaake04g256600
Deletion	Chr4	35280001	35329000	48999	3
Deletion	Chr4	35755461	35755471	10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3668515	Chr1	4066664	OsKitaake01g054700
Translocation	Chr12	3681309	Chr1	3821634	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes