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Mutant Information

Mutant Name	FN3782-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3782-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7133545 G-T Hetero INTERGENIC
SBS Chr1 7237923 A-G Hetero INTERGENIC
SBS Chr1 7237927 A-C Hetero INTERGENIC
SBS Chr1 31679375 G-A Hetero INTERGENIC
SBS Chr1 37411559 A-G Hetero INTERGENIC
SBS Chr1 38376547 T-A Hetero INTERGENIC
SBS Chr1 38376548 G-A Hetero INTERGENIC
SBS Chr2 9279367 A-G Hetero INTERGENIC
SBS Chr2 33735508 T-C Homo INTRON
SBS Chr3 5222104 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g074300
SBS Chr3 13588508 G-A Homo INTERGENIC
SBS Chr3 21944267 C-A Hetero INTERGENIC
SBS Chr3 26754090 A-G Hetero INTERGENIC
SBS Chr4 3505842 C-T Homo INTERGENIC
SBS Chr4 13620015 G-A Hetero INTRON
SBS Chr4 19460919 G-A Hetero INTERGENIC
SBS Chr4 27608714 T-C Homo INTERGENIC
SBS Chr4 33824577 T-A Hetero INTERGENIC
SBS Chr5 7305703 C-T Hetero INTERGENIC
SBS Chr6 17066874 C-A Hetero UTR_5_PRIME
SBS Chr6 19474967 T-A Hetero INTERGENIC
SBS Chr8 121364 A-G Homo NON_SYNONYMOUS_CODING OsKitaake08g001700
SBS Chr8 1905472 A-G Hetero INTERGENIC
SBS Chr8 9491733 C-A Hetero INTERGENIC
SBS Chr8 11898602 C-A Hetero INTERGENIC
SBS Chr8 18764693 G-T Hetero INTERGENIC
SBS Chr8 28254418 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g238500
SBS Chr8 29102912 G-C Homo INTERGENIC
SBS Chr10 15918303 C-T Hetero INTERGENIC
SBS Chr10 16192764 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g108700
SBS Chr11 12396570 C-T Hetero INTERGENIC
SBS Chr11 16812436 T-C Hetero INTERGENIC
SBS Chr11 18189161 G-T Hetero INTERGENIC
SBS Chr11 18189162 C-T Hetero INTERGENIC
SBS Chr11 26281868 C-T Hetero INTERGENIC
SBS Chr11 28123826 A-C Homo NON_SYNONYMOUS_CODING OsKitaake11g230600
SBS Chr12 11057727 T-G Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 683641 683645 4
Deletion Chr4 3858743 3858744 1
Deletion Chr1 5026538 5026545 7
Deletion Chr3 7172147 7172150 3
Deletion Chr11 7867001 7884000 16999 2
Deletion Chr11 13229418 13229425 7
Deletion Chr3 15551473 15551506 33
Deletion Chr8 18158156 18158175 19
Deletion Chr12 19600589 19600591 2
Deletion Chr11 22961586 22961589 3
Deletion Chr8 23210529 23210534 5
Deletion Chr2 24552514 24552522 8
Deletion Chr6 26376941 26376942 1
Deletion Chr11 26450088 26450089 1 OsKitaake11g215100
Deletion Chr11 27945131 27945136 5 OsKitaake11g229100
Deletion Chr6 29911556 29911571 15
Deletion Chr3 31979263 31979264 1
Deletion Chr1 40919323 40919328 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 30185422 30185425 2
Insertion Chr8 7462609 7462611 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 11061478 11074197 2
Inversion Chr11 11061479 11074199 2
Inversion Chr8 18688971 18703240 OsKitaake08g138400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 16035176 Chr3 32133842
Translocation Chr4 17131976 Chr3 32182017 OsKitaake03g341100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7133545	G-T	Hetero	INTERGENIC
SBS	Chr1	7237923	A-G	Hetero	INTERGENIC
SBS	Chr1	7237927	A-C	Hetero	INTERGENIC
SBS	Chr1	31679375	G-A	Hetero	INTERGENIC
SBS	Chr1	37411559	A-G	Hetero	INTERGENIC
SBS	Chr1	38376547	T-A	Hetero	INTERGENIC
SBS	Chr1	38376548	G-A	Hetero	INTERGENIC
SBS	Chr2	9279367	A-G	Hetero	INTERGENIC
SBS	Chr2	33735508	T-C	Homo	INTRON
SBS	Chr3	5222104	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g074300
SBS	Chr3	13588508	G-A	Homo	INTERGENIC
SBS	Chr3	21944267	C-A	Hetero	INTERGENIC
SBS	Chr3	26754090	A-G	Hetero	INTERGENIC
SBS	Chr4	3505842	C-T	Homo	INTERGENIC
SBS	Chr4	13620015	G-A	Hetero	INTRON
SBS	Chr4	19460919	G-A	Hetero	INTERGENIC
SBS	Chr4	27608714	T-C	Homo	INTERGENIC
SBS	Chr4	33824577	T-A	Hetero	INTERGENIC
SBS	Chr5	7305703	C-T	Hetero	INTERGENIC
SBS	Chr6	17066874	C-A	Hetero	UTR_5_PRIME
SBS	Chr6	19474967	T-A	Hetero	INTERGENIC
SBS	Chr8	121364	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g001700
SBS	Chr8	1905472	A-G	Hetero	INTERGENIC
SBS	Chr8	9491733	C-A	Hetero	INTERGENIC
SBS	Chr8	11898602	C-A	Hetero	INTERGENIC
SBS	Chr8	18764693	G-T	Hetero	INTERGENIC
SBS	Chr8	28254418	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g238500
SBS	Chr8	29102912	G-C	Homo	INTERGENIC
SBS	Chr10	15918303	C-T	Hetero	INTERGENIC
SBS	Chr10	16192764	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108700
SBS	Chr11	12396570	C-T	Hetero	INTERGENIC
SBS	Chr11	16812436	T-C	Hetero	INTERGENIC
SBS	Chr11	18189161	G-T	Hetero	INTERGENIC
SBS	Chr11	18189162	C-T	Hetero	INTERGENIC
SBS	Chr11	26281868	C-T	Hetero	INTERGENIC
SBS	Chr11	28123826	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g230600
SBS	Chr12	11057727	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	683641	683645	4
Deletion	Chr4	3858743	3858744	1
Deletion	Chr1	5026538	5026545	7
Deletion	Chr3	7172147	7172150	3
Deletion	Chr11	7867001	7884000	16999	2
Deletion	Chr11	13229418	13229425	7
Deletion	Chr3	15551473	15551506	33
Deletion	Chr8	18158156	18158175	19
Deletion	Chr12	19600589	19600591	2
Deletion	Chr11	22961586	22961589	3
Deletion	Chr8	23210529	23210534	5
Deletion	Chr2	24552514	24552522	8
Deletion	Chr6	26376941	26376942	1
Deletion	Chr11	26450088	26450089	1	OsKitaake11g215100
Deletion	Chr11	27945131	27945136	5	OsKitaake11g229100
Deletion	Chr6	29911556	29911571	15
Deletion	Chr3	31979263	31979264	1
Deletion	Chr1	40919323	40919328	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11061478	11074197	2
Inversion	Chr11	11061479	11074199	2
Inversion	Chr8	18688971	18703240	OsKitaake08g138400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes