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Mutant Information

Mutant Name	FN3783-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3783-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16193659 G-A Homo INTERGENIC
SBS Chr1 18493784 T-A Homo INTERGENIC
SBS Chr1 28630605 C-G Hetero INTERGENIC
SBS Chr2 7921713 A-T Hetero INTERGENIC
SBS Chr2 24665333 C-T Homo INTERGENIC
SBS Chr2 25051186 C-T Homo INTERGENIC
SBS Chr2 31768049 C-T Hetero INTERGENIC
SBS Chr2 34145981 C-A Hetero INTRON
SBS Chr3 14825701 C-A Hetero INTERGENIC
SBS Chr3 15449731 C-T Hetero INTERGENIC
SBS Chr3 19164021 C-T Hetero INTERGENIC
SBS Chr3 24286483 T-C Hetero INTRON
SBS Chr3 24534867 G-T Hetero INTRON
SBS Chr3 24739772 C-G Hetero INTERGENIC
SBS Chr3 32388473 T-C Hetero INTRON
SBS Chr4 25946129 T-C Hetero INTERGENIC
SBS Chr5 20595486 T-C Homo INTERGENIC
SBS Chr7 1199513 G-A Hetero INTRON
SBS Chr8 9793412 T-A Hetero INTERGENIC
SBS Chr8 15081850 G-A Hetero INTERGENIC
SBS Chr10 21030901 G-A Homo INTERGENIC
SBS Chr12 14190690 G-A Homo INTERGENIC
SBS Chr12 25331846 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1084909 1084915 6
Deletion Chr10 3483836 3483856 20
Deletion Chr1 4962812 4962815 3
Deletion Chr2 7227953 7227955 2
Deletion Chr9 9300848 9300856 8
Deletion Chr1 12884908 12884911 3
Deletion Chr8 13490546 13490548 2
Deletion Chr1 13880680 13880684 4
Deletion Chr3 22858443 22858449 6
Deletion Chr4 26087001 26181000 93999 21

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 20976434 20976437 2
Insertion Chr7 19252260 19252265 4
Insertion Chr8 2036713 2036716 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11199448 11515479 OsKitaake03g153900
Inversion Chr3 11199465 11515482 OsKitaake03g153900
Inversion Chr10 18179775 18488497 2
Inversion Chr10 18179785 18899343 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 18488500 Chr1 23280318 OsKitaake10g131100
Translocation Chr10 18899333 Chr1 23280321 OsKitaake10g134800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16193659	G-A	Homo	INTERGENIC
SBS	Chr1	18493784	T-A	Homo	INTERGENIC
SBS	Chr1	28630605	C-G	Hetero	INTERGENIC
SBS	Chr2	7921713	A-T	Hetero	INTERGENIC
SBS	Chr2	24665333	C-T	Homo	INTERGENIC
SBS	Chr2	25051186	C-T	Homo	INTERGENIC
SBS	Chr2	31768049	C-T	Hetero	INTERGENIC
SBS	Chr2	34145981	C-A	Hetero	INTRON
SBS	Chr3	14825701	C-A	Hetero	INTERGENIC
SBS	Chr3	15449731	C-T	Hetero	INTERGENIC
SBS	Chr3	19164021	C-T	Hetero	INTERGENIC
SBS	Chr3	24286483	T-C	Hetero	INTRON
SBS	Chr3	24534867	G-T	Hetero	INTRON
SBS	Chr3	24739772	C-G	Hetero	INTERGENIC
SBS	Chr3	32388473	T-C	Hetero	INTRON
SBS	Chr4	25946129	T-C	Hetero	INTERGENIC
SBS	Chr5	20595486	T-C	Homo	INTERGENIC
SBS	Chr7	1199513	G-A	Hetero	INTRON
SBS	Chr8	9793412	T-A	Hetero	INTERGENIC
SBS	Chr8	15081850	G-A	Hetero	INTERGENIC
SBS	Chr10	21030901	G-A	Homo	INTERGENIC
SBS	Chr12	14190690	G-A	Homo	INTERGENIC
SBS	Chr12	25331846	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1084909	1084915	6
Deletion	Chr10	3483836	3483856	20
Deletion	Chr1	4962812	4962815	3
Deletion	Chr2	7227953	7227955	2
Deletion	Chr9	9300848	9300856	8
Deletion	Chr1	12884908	12884911	3
Deletion	Chr8	13490546	13490548	2
Deletion	Chr1	13880680	13880684	4
Deletion	Chr3	22858443	22858449	6
Deletion	Chr4	26087001	26181000	93999	21

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11199448	11515479	OsKitaake03g153900
Inversion	Chr3	11199465	11515482	OsKitaake03g153900
Inversion	Chr10	18179775	18488497	2
Inversion	Chr10	18179785	18899343	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes