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| Mutant Information |
|---|
| Mutant Name | FN3784-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3784-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6626160 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 8000485 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 20729334 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 20729339 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 23040029 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 36833429 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5404902 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 5404903 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 37633429 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7014644 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 29318504 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 2205126 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 16754055 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2907508 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 21199942 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 25646239 | C-A | Homo | INTRON | |
| SBS | Chr6 | 29841345 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 14668210 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 1810283 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1810285 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 15164433 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 330787 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9500098 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 27506095 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 800251 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 22315267 | T-C | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 4156661 | 4156675 | 14 | |
| Deletion | Chr3 | 4597221 | 4597229 | 8 | |
| Deletion | Chr8 | 5395931 | 5395936 | 5 | OsKitaake08g058600 |
| Deletion | Chr11 | 6364846 | 6364847 | 1 | |
| Deletion | Chr11 | 8611001 | 8821000 | 209999 | 17 |
| Deletion | Chr11 | 11982001 | 12031000 | 48999 | 10 |
| Deletion | Chr1 | 15225202 | 15225205 | 3 | OsKitaake01g144700 |
| Deletion | Chr4 | 16862001 | 16890000 | 27999 | OsKitaake04g082700 |
| Deletion | Chr1 | 35134002 | 35134006 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 22704563 | 22704566 | 2 | |
| Insertion | Chr2 | 7751480 | 7751482 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 16861470 | 17101360 | |
| Inversion | Chr4 | 16894458 | 17101372 |