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Mutant Information

Mutant Name	FN3785-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3785-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27945045 T-A Homo INTERGENIC
SBS Chr1 35047119 G-T Hetero INTERGENIC
SBS Chr1 35047120 G-T Hetero INTERGENIC
SBS Chr2 10458365 T-A Hetero INTRON
SBS Chr2 11862565 T-A Hetero INTRON
SBS Chr2 13902603 C-A Hetero INTERGENIC
SBS Chr2 14973206 G-A Hetero INTERGENIC
SBS Chr2 30571296 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g312200
SBS Chr3 23550179 G-T Homo INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr5 12814724 G-A Homo INTERGENIC
SBS Chr5 13874655 G-A Hetero INTERGENIC
SBS Chr6 10805445 C-T Hetero INTERGENIC
SBS Chr7 12158364 C-T Homo INTERGENIC
SBS Chr7 14753546 C-T Homo INTERGENIC
SBS Chr7 18190858 T-G Hetero SYNONYMOUS_CODING
SBS Chr7 20780237 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 20780239 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g170900
SBS Chr7 25664165 G-A Homo INTRON
SBS Chr8 6259821 G-A Hetero INTERGENIC
SBS Chr8 19241963 T-C Homo INTERGENIC
SBS Chr9 3907507 C-T Hetero INTERGENIC
SBS Chr9 6276866 G-A Hetero INTERGENIC
SBS Chr10 4186597 C-G Hetero INTERGENIC
SBS Chr11 4554892 C-T Homo INTRON
SBS Chr11 19079634 G-A Homo INTERGENIC
SBS Chr12 22567254 A-T Hetero INTERGENIC
SBS Chr12 22567255 A-T Hetero INTERGENIC
SBS Chr12 24990691 A-C Homo INTERGENIC
SBS Chr12 26811946 C-T Homo INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 11648425 11648428 3
Deletion Chr7 22165312 22165314 2
Deletion Chr12 23929001 24106000 176999 16
Deletion Chr4 24647005 24647012 7
Deletion Chr2 27572045 27572046 1
Deletion Chr4 34020091 34020092 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40822496 40822499 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 16668038 17365721 OsKitaake02g170700
Inversion Chr2 16668045 17349207 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27945045	T-A	Homo	INTERGENIC
SBS	Chr1	35047119	G-T	Hetero	INTERGENIC
SBS	Chr1	35047120	G-T	Hetero	INTERGENIC
SBS	Chr2	10458365	T-A	Hetero	INTRON
SBS	Chr2	11862565	T-A	Hetero	INTRON
SBS	Chr2	13902603	C-A	Hetero	INTERGENIC
SBS	Chr2	14973206	G-A	Hetero	INTERGENIC
SBS	Chr2	30571296	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g312200
SBS	Chr3	23550179	G-T	Homo	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr5	12814724	G-A	Homo	INTERGENIC
SBS	Chr5	13874655	G-A	Hetero	INTERGENIC
SBS	Chr6	10805445	C-T	Hetero	INTERGENIC
SBS	Chr7	12158364	C-T	Homo	INTERGENIC
SBS	Chr7	14753546	C-T	Homo	INTERGENIC
SBS	Chr7	18190858	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	20780237	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	20780239	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g170900
SBS	Chr7	25664165	G-A	Homo	INTRON
SBS	Chr8	6259821	G-A	Hetero	INTERGENIC
SBS	Chr8	19241963	T-C	Homo	INTERGENIC
SBS	Chr9	3907507	C-T	Hetero	INTERGENIC
SBS	Chr9	6276866	G-A	Hetero	INTERGENIC
SBS	Chr10	4186597	C-G	Hetero	INTERGENIC
SBS	Chr11	4554892	C-T	Homo	INTRON
SBS	Chr11	19079634	G-A	Homo	INTERGENIC
SBS	Chr12	22567254	A-T	Hetero	INTERGENIC
SBS	Chr12	22567255	A-T	Hetero	INTERGENIC
SBS	Chr12	24990691	A-C	Homo	INTERGENIC
SBS	Chr12	26811946	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	11648425	11648428	3
Deletion	Chr7	22165312	22165314	2
Deletion	Chr12	23929001	24106000	176999	16
Deletion	Chr4	24647005	24647012	7
Deletion	Chr2	27572045	27572046	1
Deletion	Chr4	34020091	34020092	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	16668038	17365721	OsKitaake02g170700
Inversion	Chr2	16668045	17349207	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes