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Mutant Information

Mutant Name	FN3786-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3786-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 4283738 C-A Hetero INTERGENIC
SBS Chr2 15150720 C-A Homo INTERGENIC
SBS Chr2 18851815 T-C Homo INTERGENIC
SBS Chr3 18271813 T-C Hetero INTERGENIC
SBS Chr4 47831 C-T Hetero INTERGENIC
SBS Chr4 20097303 G-A Hetero INTERGENIC
SBS Chr5 1674290 C-T Hetero UTR_3_PRIME
SBS Chr5 1902192 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g021400
SBS Chr5 16362426 A-C Homo INTERGENIC
SBS Chr5 20243819 G-T Hetero INTERGENIC
SBS Chr5 22602925 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g185700
SBS Chr6 562671 C-T Hetero INTRON
SBS Chr6 20057637 G-A Hetero INTERGENIC
SBS Chr6 20057638 G-A Hetero INTERGENIC
SBS Chr6 22111711 A-G Hetero INTERGENIC
SBS Chr7 799115 G-A Homo INTERGENIC
SBS Chr7 7357099 A-G Hetero INTERGENIC
SBS Chr7 10585375 G-C Homo INTERGENIC
SBS Chr8 8273452 C-T Homo INTERGENIC
SBS Chr8 8509347 G-A Homo INTERGENIC
SBS Chr9 15959739 G-A Hetero INTERGENIC
SBS Chr10 19529362 T-C Hetero INTERGENIC
SBS Chr10 21850498 G-A Hetero INTRON
SBS Chr11 4961516 T-A Homo INTERGENIC
SBS Chr11 5159336 C-T Homo INTERGENIC
SBS Chr11 23277838 A-T Homo INTERGENIC
SBS Chr11 25548070 G-C Hetero INTRON
SBS Chr12 7868643 G-C Hetero INTRON
SBS Chr12 9607590 G-A Hetero INTERGENIC
SBS Chr12 21183088 G-C Homo NON_SYNONYMOUS_CODING OsKitaake12g166600

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 4880826 4880830 4
Deletion Chr11 5181508 5181514 6
Deletion Chr10 7164617 7164618 1
Deletion Chr11 7475786 7475787 1 OsKitaake11g084366
Deletion Chr12 10328415 10328419 4
Deletion Chr12 12060236 12060239 3
Deletion Chr11 13297904 13297927 23
Deletion Chr3 14310024 14310026 2
Deletion Chr12 21256462 21256467 5
Deletion Chr10 22501537 22501538 1 OsKitaake10g185800
Deletion Chr1 27122737 27122747 10
Deletion Chr2 28268124 28268125 1
Deletion Chr6 29649821 29649822 1 OsKitaake06g276200
Deletion Chr2 30458811 30458828 17 OsKitaake02g310500

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23591868 23591871 2
Insertion Chr3 23794776 23794779 2
Insertion Chr11 14550599 14550602 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 10168054 10208735 2
Inversion Chr1 10208735 10250508 OsKitaake01g128501
Inversion Chr11 16249014 16254307
Inversion Chr9 19547953 19714076 2
Inversion Chr9 19547965 19714242 2
Inversion Chr6 28744211 28762760
Inversion Chr6 28744224 28891886 OsKitaake06g266700

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 4043392 Chr1 10168057 OsKitaake01g128100
Translocation Chr2 4043398 Chr1 10168861 OsKitaake01g128100
Translocation Chr11 14003270 Chr2 5731091 OsKitaake02g079400
Translocation Chr11 14109911 Chr6 28762769
Translocation Chr11 14109939 Chr6 28795637 OsKitaake06g266000
Translocation Chr6 17479340 Chr4 31915185
Translocation Chr6 17479574 Chr4 31915187 OsKitaake06g162303

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	4283738	C-A	Hetero	INTERGENIC
SBS	Chr2	15150720	C-A	Homo	INTERGENIC
SBS	Chr2	18851815	T-C	Homo	INTERGENIC
SBS	Chr3	18271813	T-C	Hetero	INTERGENIC
SBS	Chr4	47831	C-T	Hetero	INTERGENIC
SBS	Chr4	20097303	G-A	Hetero	INTERGENIC
SBS	Chr5	1674290	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	1902192	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g021400
SBS	Chr5	16362426	A-C	Homo	INTERGENIC
SBS	Chr5	20243819	G-T	Hetero	INTERGENIC
SBS	Chr5	22602925	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g185700
SBS	Chr6	562671	C-T	Hetero	INTRON
SBS	Chr6	20057637	G-A	Hetero	INTERGENIC
SBS	Chr6	20057638	G-A	Hetero	INTERGENIC
SBS	Chr6	22111711	A-G	Hetero	INTERGENIC
SBS	Chr7	799115	G-A	Homo	INTERGENIC
SBS	Chr7	7357099	A-G	Hetero	INTERGENIC
SBS	Chr7	10585375	G-C	Homo	INTERGENIC
SBS	Chr8	8273452	C-T	Homo	INTERGENIC
SBS	Chr8	8509347	G-A	Homo	INTERGENIC
SBS	Chr9	15959739	G-A	Hetero	INTERGENIC
SBS	Chr10	19529362	T-C	Hetero	INTERGENIC
SBS	Chr10	21850498	G-A	Hetero	INTRON
SBS	Chr11	4961516	T-A	Homo	INTERGENIC
SBS	Chr11	5159336	C-T	Homo	INTERGENIC
SBS	Chr11	23277838	A-T	Homo	INTERGENIC
SBS	Chr11	25548070	G-C	Hetero	INTRON
SBS	Chr12	7868643	G-C	Hetero	INTRON
SBS	Chr12	9607590	G-A	Hetero	INTERGENIC
SBS	Chr12	21183088	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g166600

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	4880826	4880830	4
Deletion	Chr11	5181508	5181514	6
Deletion	Chr10	7164617	7164618	1
Deletion	Chr11	7475786	7475787	1	OsKitaake11g084366
Deletion	Chr12	10328415	10328419	4
Deletion	Chr12	12060236	12060239	3
Deletion	Chr11	13297904	13297927	23
Deletion	Chr3	14310024	14310026	2
Deletion	Chr12	21256462	21256467	5
Deletion	Chr10	22501537	22501538	1	OsKitaake10g185800
Deletion	Chr1	27122737	27122747	10
Deletion	Chr2	28268124	28268125	1
Deletion	Chr6	29649821	29649822	1	OsKitaake06g276200
Deletion	Chr2	30458811	30458828	17	OsKitaake02g310500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	10168054	10208735	2
Inversion	Chr1	10208735	10250508	OsKitaake01g128501
Inversion	Chr11	16249014	16254307
Inversion	Chr9	19547953	19714076	2
Inversion	Chr9	19547965	19714242	2
Inversion	Chr6	28744211	28762760
Inversion	Chr6	28744224	28891886	OsKitaake06g266700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes