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Mutant Information

Mutant Name	FN3787-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3787-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9353991 G-A Hetero INTRON
SBS Chr1 16113507 T-G Homo INTERGENIC
SBS Chr1 27659228 T-A Hetero INTERGENIC
SBS Chr1 35134501 C-T Hetero INTERGENIC
SBS Chr1 35796728 G-C Homo INTERGENIC
SBS Chr1 43432881 C-T Homo INTRON
SBS Chr2 433744 T-C Homo INTERGENIC
SBS Chr2 6674102 T-C Homo INTERGENIC
SBS Chr2 15515300 C-T Homo INTERGENIC
SBS Chr2 23606822 T-G Homo INTERGENIC
SBS Chr2 23766973 G-A Homo INTERGENIC
SBS Chr3 13165640 A-G Hetero INTRON
SBS Chr3 15634415 T-A Homo INTERGENIC
SBS Chr3 29596339 G-A Homo INTERGENIC
SBS Chr3 32919325 C-T Homo INTERGENIC
SBS Chr4 19294102 A-T Hetero INTERGENIC
SBS Chr5 23104327 G-A Hetero INTERGENIC
SBS Chr6 12814803 C-T Homo INTERGENIC
SBS Chr7 3538370 C-G Hetero INTERGENIC
SBS Chr7 10094116 C-T Hetero INTERGENIC
SBS Chr7 11989283 T-G Homo INTERGENIC
SBS Chr7 13641460 C-T Homo INTERGENIC
SBS Chr7 16332775 A-G Hetero INTERGENIC
SBS Chr7 23533718 G-A Hetero INTERGENIC
SBS Chr8 2083052 C-T Hetero INTERGENIC
SBS Chr8 6699586 A-T Hetero INTERGENIC
SBS Chr8 11638305 G-A Homo INTERGENIC
SBS Chr8 18016481 G-A Hetero INTERGENIC
SBS Chr9 4017730 C-G Homo INTERGENIC
SBS Chr9 17711982 C-T Hetero INTERGENIC
SBS Chr10 278561 G-A Homo INTERGENIC
SBS Chr11 6340418 C-T Hetero INTERGENIC
SBS Chr11 6608159 G-A Hetero INTERGENIC
SBS Chr11 28714902 G-C Hetero INTERGENIC
SBS Chr12 4135849 G-A Hetero INTERGENIC
SBS Chr12 11398088 G-C Hetero INTERGENIC
SBS Chr12 12145604 C-A Hetero INTERGENIC
SBS Chr12 23553006 T-A Hetero INTERGENIC
SBS Chr12 23553008 G-A Hetero INTERGENIC
SBS Chr12 23553013 G-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 888427 888430 3
Deletion Chr4 3309518 3309523 5
Deletion Chr7 4462001 4736000 273999 29
Deletion Chr7 8659994 8659996 2
Deletion Chr6 10270063 10270069 6
Deletion Chr8 10769133 10769134 1
Deletion Chr8 10769836 10769837 1
Deletion Chr7 11001001 11184000 182999 10
Deletion Chr7 11548922 11548924 2
Deletion Chr11 11859202 11859207 5 OsKitaake11g110500
Deletion Chr4 13662217 13662218 1
Deletion Chr7 14314755 14314772 17
Deletion Chr10 14815013 14815016 3
Deletion Chr10 15787001 15803000 15999 OsKitaake10g102901
Deletion Chr6 16042535 16042536 1 OsKitaake06g154300
Deletion Chr6 16226542 16226560 18
Deletion Chr9 17808497 17808513 16
Deletion Chr11 20093001 20159000 65999 3
Deletion Chr9 22477943 22477955 12 OsKitaake09g204500
Deletion Chr5 23118304 23118309 5
Deletion Chr1 27996721 27996725 4
Deletion Chr8 28506548 28506550 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 36862163 36862166 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16646330 16945662
Inversion Chr4 16913717 16945663
Inversion Chr11 20480078 20531422 OsKitaake11g160700
Inversion Chr11 20480087 20531428 OsKitaake11g160700

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 5625849 Chr2 10116465
Translocation Chr11 5625854 Chr1 949546 OsKitaake01g010600
Translocation Chr2 10116460 Chr1 949780 OsKitaake01g010600
Translocation Chr11 27247750 Chr10 15801244 OsKitaake11g222700
Translocation Chr11 27387170 Chr10 15787373

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9353991	G-A	Hetero	INTRON
SBS	Chr1	16113507	T-G	Homo	INTERGENIC
SBS	Chr1	27659228	T-A	Hetero	INTERGENIC
SBS	Chr1	35134501	C-T	Hetero	INTERGENIC
SBS	Chr1	35796728	G-C	Homo	INTERGENIC
SBS	Chr1	43432881	C-T	Homo	INTRON
SBS	Chr2	433744	T-C	Homo	INTERGENIC
SBS	Chr2	6674102	T-C	Homo	INTERGENIC
SBS	Chr2	15515300	C-T	Homo	INTERGENIC
SBS	Chr2	23606822	T-G	Homo	INTERGENIC
SBS	Chr2	23766973	G-A	Homo	INTERGENIC
SBS	Chr3	13165640	A-G	Hetero	INTRON
SBS	Chr3	15634415	T-A	Homo	INTERGENIC
SBS	Chr3	29596339	G-A	Homo	INTERGENIC
SBS	Chr3	32919325	C-T	Homo	INTERGENIC
SBS	Chr4	19294102	A-T	Hetero	INTERGENIC
SBS	Chr5	23104327	G-A	Hetero	INTERGENIC
SBS	Chr6	12814803	C-T	Homo	INTERGENIC
SBS	Chr7	3538370	C-G	Hetero	INTERGENIC
SBS	Chr7	10094116	C-T	Hetero	INTERGENIC
SBS	Chr7	11989283	T-G	Homo	INTERGENIC
SBS	Chr7	13641460	C-T	Homo	INTERGENIC
SBS	Chr7	16332775	A-G	Hetero	INTERGENIC
SBS	Chr7	23533718	G-A	Hetero	INTERGENIC
SBS	Chr8	2083052	C-T	Hetero	INTERGENIC
SBS	Chr8	6699586	A-T	Hetero	INTERGENIC
SBS	Chr8	11638305	G-A	Homo	INTERGENIC
SBS	Chr8	18016481	G-A	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Homo	INTERGENIC
SBS	Chr9	17711982	C-T	Hetero	INTERGENIC
SBS	Chr10	278561	G-A	Homo	INTERGENIC
SBS	Chr11	6340418	C-T	Hetero	INTERGENIC
SBS	Chr11	6608159	G-A	Hetero	INTERGENIC
SBS	Chr11	28714902	G-C	Hetero	INTERGENIC
SBS	Chr12	4135849	G-A	Hetero	INTERGENIC
SBS	Chr12	11398088	G-C	Hetero	INTERGENIC
SBS	Chr12	12145604	C-A	Hetero	INTERGENIC
SBS	Chr12	23553006	T-A	Hetero	INTERGENIC
SBS	Chr12	23553008	G-A	Hetero	INTERGENIC
SBS	Chr12	23553013	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	888427	888430	3
Deletion	Chr4	3309518	3309523	5
Deletion	Chr7	4462001	4736000	273999	29
Deletion	Chr7	8659994	8659996	2
Deletion	Chr6	10270063	10270069	6
Deletion	Chr8	10769133	10769134	1
Deletion	Chr8	10769836	10769837	1
Deletion	Chr7	11001001	11184000	182999	10
Deletion	Chr7	11548922	11548924	2
Deletion	Chr11	11859202	11859207	5	OsKitaake11g110500
Deletion	Chr4	13662217	13662218	1
Deletion	Chr7	14314755	14314772	17
Deletion	Chr10	14815013	14815016	3
Deletion	Chr10	15787001	15803000	15999	OsKitaake10g102901
Deletion	Chr6	16042535	16042536	1	OsKitaake06g154300
Deletion	Chr6	16226542	16226560	18
Deletion	Chr9	17808497	17808513	16
Deletion	Chr11	20093001	20159000	65999	3
Deletion	Chr9	22477943	22477955	12	OsKitaake09g204500
Deletion	Chr5	23118304	23118309	5
Deletion	Chr1	27996721	27996725	4
Deletion	Chr8	28506548	28506550	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16646330	16945662
Inversion	Chr4	16913717	16945663
Inversion	Chr11	20480078	20531422	OsKitaake11g160700
Inversion	Chr11	20480087	20531428	OsKitaake11g160700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes