Search Kitaake

Mutant Information

Mutant Name	FN3788-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3788-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29510395 G-A Hetero INTERGENIC
SBS Chr2 14159878 C-G Hetero INTERGENIC
SBS Chr2 19258534 C-T Hetero UTR_5_PRIME
SBS Chr2 25909591 G-A Homo INTERGENIC
SBS Chr4 1598576 G-T Homo INTERGENIC
SBS Chr4 2620861 C-T Homo INTERGENIC
SBS Chr4 19243383 G-C Hetero INTERGENIC
SBS Chr4 26197341 A-G Homo SYNONYMOUS_CODING
SBS Chr5 27944782 T-A Hetero INTERGENIC
SBS Chr5 29148532 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 3774997 G-A Homo INTERGENIC
SBS Chr6 17073518 C-T Hetero INTRON
SBS Chr6 18841899 G-T Hetero INTERGENIC
SBS Chr6 26576901 G-T Homo INTERGENIC
SBS Chr7 12248173 A-T Hetero INTERGENIC
SBS Chr8 7392145 C-T Homo INTERGENIC
SBS Chr8 12876728 G-T Hetero INTERGENIC
SBS Chr8 12876731 A-T Hetero INTERGENIC
SBS Chr8 15987050 G-A Hetero INTERGENIC
SBS Chr8 18212230 G-A Homo INTERGENIC
SBS Chr8 23116675 T-C Hetero INTERGENIC
SBS Chr8 24566502 A-G Hetero INTERGENIC
SBS Chr9 16743447 C-T Hetero INTERGENIC
SBS Chr9 22676940 T-A Hetero INTERGENIC
SBS Chr10 1908619 A-T Homo INTERGENIC
SBS Chr11 25357601 G-A Homo INTERGENIC
SBS Chr12 4565344 A-T Homo INTRON

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 85068 85076 8
Deletion Chr2 3949632 3949648 16
Deletion Chr1 4182980 4182981 1
Deletion Chr3 8386920 8386921 1
Deletion Chr10 20778494 20778502 8
Deletion Chr11 24501473 24501475 2
Deletion Chr6 26868848 26868856 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 34336476 34336479 2
Insertion Chr12 8936016 8936019 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 18742632 18919103
Inversion Chr1 18742638 18919102
Inversion Chr10 19073784 19524275 OsKitaake10g137100
Inversion Chr10 19073793 19524280 OsKitaake10g137100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29510395	G-A	Hetero	INTERGENIC
SBS	Chr2	14159878	C-G	Hetero	INTERGENIC
SBS	Chr2	19258534	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	25909591	G-A	Homo	INTERGENIC
SBS	Chr4	1598576	G-T	Homo	INTERGENIC
SBS	Chr4	2620861	C-T	Homo	INTERGENIC
SBS	Chr4	19243383	G-C	Hetero	INTERGENIC
SBS	Chr4	26197341	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr5	27944782	T-A	Hetero	INTERGENIC
SBS	Chr5	29148532	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	3774997	G-A	Homo	INTERGENIC
SBS	Chr6	17073518	C-T	Hetero	INTRON
SBS	Chr6	18841899	G-T	Hetero	INTERGENIC
SBS	Chr6	26576901	G-T	Homo	INTERGENIC
SBS	Chr7	12248173	A-T	Hetero	INTERGENIC
SBS	Chr8	7392145	C-T	Homo	INTERGENIC
SBS	Chr8	12876728	G-T	Hetero	INTERGENIC
SBS	Chr8	12876731	A-T	Hetero	INTERGENIC
SBS	Chr8	15987050	G-A	Hetero	INTERGENIC
SBS	Chr8	18212230	G-A	Homo	INTERGENIC
SBS	Chr8	23116675	T-C	Hetero	INTERGENIC
SBS	Chr8	24566502	A-G	Hetero	INTERGENIC
SBS	Chr9	16743447	C-T	Hetero	INTERGENIC
SBS	Chr9	22676940	T-A	Hetero	INTERGENIC
SBS	Chr10	1908619	A-T	Homo	INTERGENIC
SBS	Chr11	25357601	G-A	Homo	INTERGENIC
SBS	Chr12	4565344	A-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	85068	85076	8
Deletion	Chr2	3949632	3949648	16
Deletion	Chr1	4182980	4182981	1
Deletion	Chr3	8386920	8386921	1
Deletion	Chr10	20778494	20778502	8
Deletion	Chr11	24501473	24501475	2
Deletion	Chr6	26868848	26868856	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18742632	18919103
Inversion	Chr1	18742638	18919102
Inversion	Chr10	19073784	19524275	OsKitaake10g137100
Inversion	Chr10	19073793	19524280	OsKitaake10g137100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes