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| Mutant Information |
|---|
| Mutant Name | FN3789-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3789-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 41545506 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 41689246 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g455600 |
| SBS | Chr2 | 22311795 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 9277887 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 10253524 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20807021 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 6426315 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11477655 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13433614 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29525182 | G-A | Homo | INTRON | |
| SBS | Chr6 | 4025282 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15764894 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26573976 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 1466732 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4559982 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4688179 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27663063 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g258300 |
| SBS | Chr9 | 5934305 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 19477610 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 117637 | G-C | Hetero | INTRON | |
| SBS | Chr10 | 7707566 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 21210425 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 18161913 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 20107621 | G-A | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 1116601 | 1116602 | 1 | |
| Deletion | Chr5 | 1274857 | 1274866 | 9 | |
| Deletion | Chr6 | 3752001 | 3763000 | 10999 | 3 |
| Deletion | Chr11 | 7035214 | 7035227 | 13 | OsKitaake11g080500 |
| Deletion | Chr9 | 7555831 | 7555844 | 13 | |
| Deletion | Chr8 | 8442184 | 8442185 | 1 | |
| Deletion | Chr12 | 12604718 | 12604725 | 7 | |
| Deletion | Chr3 | 24968151 | 24968166 | 15 | |
| Deletion | Chr7 | 29362826 | 29362857 | 31 | |
| Deletion | Chr1 | 32015567 | 32015573 | 6 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 26950559 | 26950567 | 7 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 538913 | 692228 | OsKitaake11g006100 |
| Inversion | Chr11 | 538991 | 888903 | 2 |