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Mutant Information

Mutant Name	FN3790-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3790-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10196070 G-A Hetero INTERGENIC
SBS Chr1 30717057 G-A Hetero INTERGENIC
SBS Chr2 2121679 C-T Hetero INTERGENIC
SBS Chr2 4194001 G-A Hetero INTERGENIC
SBS Chr2 12714646 C-G Hetero INTERGENIC
SBS Chr2 14763381 G-A Hetero INTERGENIC
SBS Chr2 18505024 A-T Hetero INTERGENIC
SBS Chr2 22793594 C-A Hetero INTERGENIC
SBS Chr2 22903214 T-A Hetero INTERGENIC
SBS Chr2 28810303 C-T Hetero INTERGENIC
SBS Chr3 1316329 A-T Hetero INTERGENIC
SBS Chr3 1840349 C-T Hetero INTERGENIC
SBS Chr3 12052693 G-A Hetero INTERGENIC
SBS Chr3 16738674 C-T Hetero INTERGENIC
SBS Chr3 20179677 C-T Hetero INTERGENIC
SBS Chr3 22831773 A-C Hetero INTRON
SBS Chr3 27513858 G-A Hetero INTERGENIC
SBS Chr3 31462924 G-A Homo INTRON
SBS Chr4 9641277 C-T Hetero INTERGENIC
SBS Chr4 11960363 C-A Homo INTERGENIC
SBS Chr4 31751746 G-T Homo INTERGENIC
SBS Chr5 5357510 T-C Hetero INTERGENIC
SBS Chr5 6230321 T-G Hetero INTERGENIC
SBS Chr5 25016591 G-C Hetero INTERGENIC
SBS Chr6 6158718 A-G Hetero INTRON
SBS Chr6 10999263 T-A Hetero INTERGENIC
SBS Chr6 21393377 C-G Hetero SPLICE_SITE_REGION
SBS Chr6 25253571 C-T Hetero INTERGENIC
SBS Chr7 18251207 G-A Hetero INTRON
SBS Chr7 27316885 C-T Hetero INTERGENIC
SBS Chr8 3505737 G-A Homo INTERGENIC
SBS Chr8 11181056 A-G Homo INTERGENIC
SBS Chr8 23001428 A-C Homo INTERGENIC
SBS Chr8 26610952 C-A Homo INTERGENIC
SBS Chr8 28757696 A-G Homo UTR_3_PRIME
SBS Chr8 28818842 G-A Homo INTERGENIC
SBS Chr10 465196 C-G Hetero INTERGENIC
SBS Chr10 884248 T-A Hetero INTERGENIC
SBS Chr10 12189856 A-G Hetero INTERGENIC
SBS Chr11 10988746 G-A Homo INTERGENIC
SBS Chr12 7671411 A-G Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2417400 2417404 4
Deletion Chr11 2503404 2503407 3
Deletion Chr2 4089190 4089200 10
Deletion Chr2 8113001 8223000 109999 10
Deletion Chr2 9196688 9196690 2
Deletion Chr6 9539295 9539299 4
Deletion Chr7 10822651 10822660 9
Deletion Chr2 11705179 11705180 1
Deletion Chr12 12202001 12511000 308999 11
Deletion Chr8 12333122 12333131 9
Deletion Chr12 12560001 12759000 198999 11
Deletion Chr3 12945019 12945024 5
Deletion Chr12 13331260 13331261 1
Deletion Chr2 14265001 14342000 76999 OsKitaake02g153200
Deletion Chr2 14419001 14759000 339999 14
Deletion Chr1 14596749 14596758 9
Deletion Chr2 16454335 16454338 3
Deletion Chr9 18331825 18331833 8
Deletion Chr1 20017186 20017195 9
Deletion Chr1 20071001 20140000 68999
Deletion Chr5 22308816 22308823 7
Deletion Chr12 23560243 23560247 4
Deletion Chr1 29404646 29404650 4
Deletion Chr3 31081592 31081594 2
Deletion Chr4 34255246 34255252 6
Deletion Chr3 36839947 36839954 7 OsKitaake03g411400
Deletion Chr3 36958668 36958670 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25610951 25610954 2
Insertion Chr7 21976534 21976537 2
Insertion Chr12 11700973 11700975 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 6806294 7225727 2
Inversion Chr1 6806324 6929768 OsKitaake01g085800
Inversion Chr12 12514091 12762696 OsKitaake12g107900
Inversion Chr12 12560856 12936902
Inversion Chr3 16613166 16769182

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10196070	G-A	Hetero	INTERGENIC
SBS	Chr1	30717057	G-A	Hetero	INTERGENIC
SBS	Chr2	2121679	C-T	Hetero	INTERGENIC
SBS	Chr2	4194001	G-A	Hetero	INTERGENIC
SBS	Chr2	12714646	C-G	Hetero	INTERGENIC
SBS	Chr2	14763381	G-A	Hetero	INTERGENIC
SBS	Chr2	18505024	A-T	Hetero	INTERGENIC
SBS	Chr2	22793594	C-A	Hetero	INTERGENIC
SBS	Chr2	22903214	T-A	Hetero	INTERGENIC
SBS	Chr2	28810303	C-T	Hetero	INTERGENIC
SBS	Chr3	1316329	A-T	Hetero	INTERGENIC
SBS	Chr3	1840349	C-T	Hetero	INTERGENIC
SBS	Chr3	12052693	G-A	Hetero	INTERGENIC
SBS	Chr3	16738674	C-T	Hetero	INTERGENIC
SBS	Chr3	20179677	C-T	Hetero	INTERGENIC
SBS	Chr3	22831773	A-C	Hetero	INTRON
SBS	Chr3	27513858	G-A	Hetero	INTERGENIC
SBS	Chr3	31462924	G-A	Homo	INTRON
SBS	Chr4	9641277	C-T	Hetero	INTERGENIC
SBS	Chr4	11960363	C-A	Homo	INTERGENIC
SBS	Chr4	31751746	G-T	Homo	INTERGENIC
SBS	Chr5	5357510	T-C	Hetero	INTERGENIC
SBS	Chr5	6230321	T-G	Hetero	INTERGENIC
SBS	Chr5	25016591	G-C	Hetero	INTERGENIC
SBS	Chr6	6158718	A-G	Hetero	INTRON
SBS	Chr6	10999263	T-A	Hetero	INTERGENIC
SBS	Chr6	21393377	C-G	Hetero	SPLICE_SITE_REGION
SBS	Chr6	25253571	C-T	Hetero	INTERGENIC
SBS	Chr7	18251207	G-A	Hetero	INTRON
SBS	Chr7	27316885	C-T	Hetero	INTERGENIC
SBS	Chr8	3505737	G-A	Homo	INTERGENIC
SBS	Chr8	11181056	A-G	Homo	INTERGENIC
SBS	Chr8	23001428	A-C	Homo	INTERGENIC
SBS	Chr8	26610952	C-A	Homo	INTERGENIC
SBS	Chr8	28757696	A-G	Homo	UTR_3_PRIME
SBS	Chr8	28818842	G-A	Homo	INTERGENIC
SBS	Chr10	465196	C-G	Hetero	INTERGENIC
SBS	Chr10	884248	T-A	Hetero	INTERGENIC
SBS	Chr10	12189856	A-G	Hetero	INTERGENIC
SBS	Chr11	10988746	G-A	Homo	INTERGENIC
SBS	Chr12	7671411	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2417400	2417404	4
Deletion	Chr11	2503404	2503407	3
Deletion	Chr2	4089190	4089200	10
Deletion	Chr2	8113001	8223000	109999	10
Deletion	Chr2	9196688	9196690	2
Deletion	Chr6	9539295	9539299	4
Deletion	Chr7	10822651	10822660	9
Deletion	Chr2	11705179	11705180	1
Deletion	Chr12	12202001	12511000	308999	11
Deletion	Chr8	12333122	12333131	9
Deletion	Chr12	12560001	12759000	198999	11
Deletion	Chr3	12945019	12945024	5
Deletion	Chr12	13331260	13331261	1
Deletion	Chr2	14265001	14342000	76999	OsKitaake02g153200
Deletion	Chr2	14419001	14759000	339999	14
Deletion	Chr1	14596749	14596758	9
Deletion	Chr2	16454335	16454338	3
Deletion	Chr9	18331825	18331833	8
Deletion	Chr1	20017186	20017195	9
Deletion	Chr1	20071001	20140000	68999
Deletion	Chr5	22308816	22308823	7
Deletion	Chr12	23560243	23560247	4
Deletion	Chr1	29404646	29404650	4
Deletion	Chr3	31081592	31081594	2
Deletion	Chr4	34255246	34255252	6
Deletion	Chr3	36839947	36839954	7	OsKitaake03g411400
Deletion	Chr3	36958668	36958670	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6806294	7225727	2
Inversion	Chr1	6806324	6929768	OsKitaake01g085800
Inversion	Chr12	12514091	12762696	OsKitaake12g107900
Inversion	Chr12	12560856	12936902
Inversion	Chr3	16613166	16769182

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes