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Mutant Information

Mutant Name	FN3791-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3791-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6799974 T-C Homo SYNONYMOUS_CODING
SBS Chr2 12860 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g000100
SBS Chr2 9472736 G-A Hetero INTERGENIC
SBS Chr2 13384019 C-T Hetero INTERGENIC
SBS Chr3 17141545 G-A Hetero INTERGENIC
SBS Chr3 18202758 C-T Hetero INTERGENIC
SBS Chr3 18842612 G-T Hetero INTERGENIC
SBS Chr4 28745872 T-G Hetero INTERGENIC
SBS Chr5 3755146 C-T Hetero INTERGENIC
SBS Chr5 9020466 C-T Homo INTERGENIC
SBS Chr5 16054460 G-T Homo INTERGENIC
SBS Chr5 16159557 A-T Homo INTERGENIC
SBS Chr5 16722684 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g128100
SBS Chr6 6592208 G-A Hetero INTERGENIC
SBS Chr6 7533299 T-A Hetero INTERGENIC
SBS Chr6 7533300 G-A Hetero INTERGENIC
SBS Chr7 28213513 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g266400
SBS Chr8 330663 A-G Homo INTERGENIC
SBS Chr8 21344190 A-T Homo INTERGENIC
SBS Chr9 5376293 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g030800
SBS Chr10 352715 C-T Homo INTRON
SBS Chr10 12187705 G-A Hetero INTERGENIC
SBS Chr11 13146296 G-A Hetero INTERGENIC
SBS Chr11 19752849 C-T Hetero INTERGENIC
SBS Chr11 28030551 G-A Homo INTERGENIC
SBS Chr12 2836167 C-T Homo INTERGENIC
SBS Chr12 6889289 A-G Hetero INTERGENIC
SBS Chr12 10968190 C-T Hetero INTERGENIC
SBS Chr12 20851765 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 78436 78437 1
Deletion Chr4 1852004 1852009 5
Deletion Chr4 2098515 2098516 1
Deletion Chr2 11877822 11877831 9
Deletion Chr11 12502258 12502259 1
Deletion Chr3 13406077 13406083 6
Deletion Chr7 17062323 17062324 1
Deletion Chr7 18989023 18989024 1
Deletion Chr1 20309342 20309355 13
Deletion Chr11 22805565 22805573 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32299490 32299493 2
Insertion Chr9 15675341 15675346 4
Insertion Chr12 8900280 8900283 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 3618721 3714933
Inversion Chr9 4147102 4427066
Inversion Chr9 4147108 4427072
Inversion Chr6 17531609 18470838
Inversion Chr6 17531637 18470835

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 31673990 Chr2 14974464 OsKitaake03g333700
Translocation Chr3 31674003 Chr2 14973524 OsKitaake03g333700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6799974	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr2	12860	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g000100
SBS	Chr2	9472736	G-A	Hetero	INTERGENIC
SBS	Chr2	13384019	C-T	Hetero	INTERGENIC
SBS	Chr3	17141545	G-A	Hetero	INTERGENIC
SBS	Chr3	18202758	C-T	Hetero	INTERGENIC
SBS	Chr3	18842612	G-T	Hetero	INTERGENIC
SBS	Chr4	28745872	T-G	Hetero	INTERGENIC
SBS	Chr5	3755146	C-T	Hetero	INTERGENIC
SBS	Chr5	9020466	C-T	Homo	INTERGENIC
SBS	Chr5	16054460	G-T	Homo	INTERGENIC
SBS	Chr5	16159557	A-T	Homo	INTERGENIC
SBS	Chr5	16722684	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g128100
SBS	Chr6	6592208	G-A	Hetero	INTERGENIC
SBS	Chr6	7533299	T-A	Hetero	INTERGENIC
SBS	Chr6	7533300	G-A	Hetero	INTERGENIC
SBS	Chr7	28213513	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g266400
SBS	Chr8	330663	A-G	Homo	INTERGENIC
SBS	Chr8	21344190	A-T	Homo	INTERGENIC
SBS	Chr9	5376293	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g030800
SBS	Chr10	352715	C-T	Homo	INTRON
SBS	Chr10	12187705	G-A	Hetero	INTERGENIC
SBS	Chr11	13146296	G-A	Hetero	INTERGENIC
SBS	Chr11	19752849	C-T	Hetero	INTERGENIC
SBS	Chr11	28030551	G-A	Homo	INTERGENIC
SBS	Chr12	2836167	C-T	Homo	INTERGENIC
SBS	Chr12	6889289	A-G	Hetero	INTERGENIC
SBS	Chr12	10968190	C-T	Hetero	INTERGENIC
SBS	Chr12	20851765	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	78436	78437	1
Deletion	Chr4	1852004	1852009	5
Deletion	Chr4	2098515	2098516	1
Deletion	Chr2	11877822	11877831	9
Deletion	Chr11	12502258	12502259	1
Deletion	Chr3	13406077	13406083	6
Deletion	Chr7	17062323	17062324	1
Deletion	Chr7	18989023	18989024	1
Deletion	Chr1	20309342	20309355	13
Deletion	Chr11	22805565	22805573	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3618721	3714933
Inversion	Chr9	4147102	4427066
Inversion	Chr9	4147108	4427072
Inversion	Chr6	17531609	18470838
Inversion	Chr6	17531637	18470835

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes