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| Mutant Information |
|---|
| Mutant Name | FN3792-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3792-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26123467 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 40799870 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 5783230 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 26164839 | C-T | Hetero | START_GAINED | |
| SBS | Chr3 | 12056153 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19529387 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23497386 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 28026157 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16135184 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 23773851 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 28087754 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 7623341 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 15906861 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 3451557 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g044000 |
| SBS | Chr7 | 20195681 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14460857 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 3847358 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7624368 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8163803 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 1584471 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 10433076 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 13943972 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 20577761 | C-G | Homo | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 917239 | 917243 | 4 | |
| Deletion | Chr5 | 2384311 | 2384318 | 7 | |
| Deletion | Chr10 | 12572321 | 12572322 | 1 | OsKitaake10g076400 |
| Deletion | Chr12 | 17678616 | 17678621 | 5 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 26165643 | 26165648 | 4 |