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Mutant Information

Mutant Name	FN3793-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3793-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10310226 C-A Homo INTRON
SBS Chr1 33764999 A-G Hetero INTERGENIC
SBS Chr2 12697913 T-C Hetero INTERGENIC
SBS Chr2 17423054 G-A Hetero INTRON
SBS Chr2 19866380 A-C Hetero INTRON
SBS Chr3 8935762 T-A Homo INTERGENIC
SBS Chr3 26353527 A-T Hetero INTERGENIC
SBS Chr3 29950774 T-C Homo INTERGENIC
SBS Chr3 36482870 C-A Hetero INTERGENIC
SBS Chr3 36629113 C-T Hetero INTERGENIC
SBS Chr3 36841762 C-T Hetero INTRON
SBS Chr5 1001891 G-A Hetero INTERGENIC
SBS Chr5 15245503 T-A Hetero INTRON
SBS Chr6 7945288 G-A Homo INTERGENIC
SBS Chr6 8916739 T-A Homo INTERGENIC
SBS Chr6 30295551 A-C Homo UTR_3_PRIME
SBS Chr7 8332418 G-C Hetero INTERGENIC
SBS Chr9 4967040 A-G Hetero INTERGENIC
SBS Chr9 6739844 A-G Hetero INTERGENIC
SBS Chr9 8209368 G-T Hetero INTERGENIC
SBS Chr11 12751932 C-T Hetero INTERGENIC
SBS Chr12 420020 A-T Hetero INTERGENIC
SBS Chr12 3924774 G-T Hetero INTERGENIC
SBS Chr12 16466636 A-G Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 4473451 4473454 3
Deletion Chr1 5177578 5177579 1
Deletion Chr8 7868081 7868107 26
Deletion Chr11 8851702 8851704 2
Deletion Chr6 9503596 9503600 4
Deletion Chr2 10266413 10266415 2
Deletion Chr6 16717454 16717475 21
Deletion Chr11 21881367 21881371 4
Deletion Chr7 21891084 21891086 2
Deletion Chr6 23734266 23734274 8
Deletion Chr11 24082679 24082681 2
Deletion Chr7 25236181 25236198 17
Deletion Chr12 25641350 25641356 6
Deletion Chr1 26588174 26588175 1
Deletion Chr3 32239001 32270000 30999 6
Deletion Chr3 32597845 32597846 1
Deletion Chr3 32772001 32816000 43999 6

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 7732835 7732837 1
Insertion Chr6 9801570 9801573 2
Insertion Chr7 4036415 4036418 2
Insertion Chr8 15261271 15261274 2
Insertion Chr8 27232135 27232138 2
Insertion Chr10 13944259 13944261 1
Insertion Chr11 1842027 1842030 2
Insertion Chr12 11705789 11705791 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 19711848 20241165
Inversion Chr8 19711853 20241169

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7838963 Chr3 8939810 OsKitaake03g122600
Translocation Chr9 7838968 Chr3 8932820 OsKitaake03g122500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10310226	C-A	Homo	INTRON
SBS	Chr1	33764999	A-G	Hetero	INTERGENIC
SBS	Chr2	12697913	T-C	Hetero	INTERGENIC
SBS	Chr2	17423054	G-A	Hetero	INTRON
SBS	Chr2	19866380	A-C	Hetero	INTRON
SBS	Chr3	8935762	T-A	Homo	INTERGENIC
SBS	Chr3	26353527	A-T	Hetero	INTERGENIC
SBS	Chr3	29950774	T-C	Homo	INTERGENIC
SBS	Chr3	36482870	C-A	Hetero	INTERGENIC
SBS	Chr3	36629113	C-T	Hetero	INTERGENIC
SBS	Chr3	36841762	C-T	Hetero	INTRON
SBS	Chr5	1001891	G-A	Hetero	INTERGENIC
SBS	Chr5	15245503	T-A	Hetero	INTRON
SBS	Chr6	7945288	G-A	Homo	INTERGENIC
SBS	Chr6	8916739	T-A	Homo	INTERGENIC
SBS	Chr6	30295551	A-C	Homo	UTR_3_PRIME
SBS	Chr7	8332418	G-C	Hetero	INTERGENIC
SBS	Chr9	4967040	A-G	Hetero	INTERGENIC
SBS	Chr9	6739844	A-G	Hetero	INTERGENIC
SBS	Chr9	8209368	G-T	Hetero	INTERGENIC
SBS	Chr11	12751932	C-T	Hetero	INTERGENIC
SBS	Chr12	420020	A-T	Hetero	INTERGENIC
SBS	Chr12	3924774	G-T	Hetero	INTERGENIC
SBS	Chr12	16466636	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	4473451	4473454	3
Deletion	Chr1	5177578	5177579	1
Deletion	Chr8	7868081	7868107	26
Deletion	Chr11	8851702	8851704	2
Deletion	Chr6	9503596	9503600	4
Deletion	Chr2	10266413	10266415	2
Deletion	Chr6	16717454	16717475	21
Deletion	Chr11	21881367	21881371	4
Deletion	Chr7	21891084	21891086	2
Deletion	Chr6	23734266	23734274	8
Deletion	Chr11	24082679	24082681	2
Deletion	Chr7	25236181	25236198	17
Deletion	Chr12	25641350	25641356	6
Deletion	Chr1	26588174	26588175	1
Deletion	Chr3	32239001	32270000	30999	6
Deletion	Chr3	32597845	32597846	1
Deletion	Chr3	32772001	32816000	43999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	19711848	20241165
Inversion	Chr8	19711853	20241169

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes