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| Mutant Information |
|---|
| Mutant Name | FN3794-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3794-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14527296 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g165000 |
| SBS | Chr1 | 16779894 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g178000 |
| SBS | Chr2 | 12791002 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 11751280 | T-A | Homo | INTRON | |
| SBS | Chr4 | 5259037 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13165502 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 13215935 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15901386 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 28850243 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 1142516 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 11489948 | A-C | Hetero | INTRON | |
| SBS | Chr6 | 17778597 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17873783 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 8784379 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 9475506 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 17762185 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1028242 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6776100 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 10295450 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13222887 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 8278936 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7819072 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 12849389 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 17704811 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 21992894 | C-T | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 681180 | 681191 | 11 | |
| Deletion | Chr3 | 3947402 | 3947404 | 2 | |
| Deletion | Chr5 | 4079001 | 4124000 | 44999 | 5 |
| Deletion | Chr7 | 12817774 | 12817791 | 17 | |
| Deletion | Chr1 | 16873599 | 16873603 | 4 | |
| Deletion | Chr4 | 19081215 | 19081217 | 2 | |
| Deletion | Chr1 | 22933558 | 22933570 | 12 | |
| Deletion | Chr10 | 23384493 | 23384498 | 5 | |
| Deletion | Chr5 | 28861806 | 28861807 | 1 | |
| Deletion | Chr3 | 32277081 | 32277082 | 1 | |
| Deletion | Chr3 | 35775801 | 35775808 | 7 | OsKitaake03g393600 |
| Deletion | Chr2 | 36591009 | 36591010 | 1 | OsKitaake02g389200 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 2497159 | 2497166 | 6 | |
| Insertion | Chr2 | 21197458 | 21197461 | 2 | |
| Insertion | Chr3 | 2131756 | 2131759 | 2 | |
| Insertion | Chr3 | 31345097 | 31345099 | 1 | OsKitaake03g330200  |
| Insertion | Chr5 | 5468392 | 5468395 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 169745 | Chr6 | 12959033 | OsKitaake06g137650 |
| Translocation | Chr11 | 169756 | Chr6 | 12966528 | |
| Translocation | Chr11 | 21524281 | Chr1 | 6170053 | OsKitaake11g169850 |