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| Mutant Information |
|---|
| Mutant Name | FN3795-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3795-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 43
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 30627101 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 31313630 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32755787 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34617855 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 632229 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 2453394 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6810088 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13647068 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 14503819 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18386822 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33225156 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34278946 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34278947 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 2990543 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 9368932 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15748271 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21374890 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21380598 | A-T | Homo | INTRON | |
| SBS | Chr4 | 17516417 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 18687218 | T-G | Homo | INTERGENIC | |
| SBS | Chr4 | 19954798 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 86715 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 1235605 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 25317123 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 25655339 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 28317976 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 28450378 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8985455 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g108300 |
| SBS | Chr6 | 9437222 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 10754215 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 6070931 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 9482069 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 13488279 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 9715532 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 13705549 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 20859105 | C-A | Homo | INTRON | |
| SBS | Chr8 | 27778901 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 5594968 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5594970 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 6762760 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 22378998 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 10671910 | G-T | Homo | INTRON | |
| SBS | Chr12 | 15640767 | A-C | Homo | INTRON |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1587756 | 1587757 | 1 | OsKitaake11g020900 |
| Deletion | Chr8 | 2700812 | 2700816 | 4 | |
| Deletion | Chr7 | 8512447 | 8512449 | 2 | |
| Deletion | Chr1 | 14936147 | 14936157 | 10 | |
| Deletion | Chr11 | 17591149 | 17591151 | 2 | |
| Deletion | Chr11 | 17729548 | 17729550 | 2 | |
| Deletion | Chr1 | 24257875 | 24257885 | 10 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 23632388 | 23632391 | 2 | |
| Insertion | Chr2 | 4280671 | 4280676 | 4 | |
| Insertion | Chr5 | 4527954 | 4527957 | 2 | |
| Insertion | Chr7 | 22288456 | 22288459 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 6216572 | 6218309 | |
| Inversion | Chr7 | 6216579 | 6218312 |