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| Mutant Information |
|---|
| Mutant Name | FN3796-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3796-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22107482 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 25063929 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 25194355 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6010231 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g082300 |
| SBS | Chr2 | 19794278 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 31815582 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 10158452 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 31639073 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21666282 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 26901703 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 15136596 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 17472718 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 6956947 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6956955 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6956956 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19993770 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 19993771 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19993772 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20120321 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 24276855 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9913477 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 18190823 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 27908717 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 5526947 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 9059949 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5750838 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9184017 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 9184018 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 9184020 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 9323206 | T-C | Homo | INTRON | |
| SBS | Chr11 | 19076448 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 20632529 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2244903 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13154648 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18876282 | A-C | Homo | INTERGENIC | |
| SBS | Chr12 | 19301606 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 19301607 | C-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 976001 | 1020000 | 43999 | 12 |
| Deletion | Chr2 | 3370037 | 3370047 | 10 | |
| Deletion | Chr6 | 11494599 | 11494600 | 1 | |
| Deletion | Chr6 | 15125430 | 15125440 | 10 | |
| Deletion | Chr6 | 18425937 | 18425938 | 1 | |
| Deletion | Chr5 | 19818873 | 19818875 | 2 | |
| Deletion | Chr9 | 22675001 | 22744000 | 68999 | 13 |
| Deletion | Chr5 | 23819151 | 23819168 | 17 | OsKitaake05g209200 |
| Deletion | Chr6 | 29471885 | 29471886 | 1 | |
| Deletion | Chr3 | 35280523 | 35280529 | 6 | |
| Deletion | Chr1 | 41854932 | 41854934 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 26682322 | 26682325 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 5605422 | 5645542 | OsKitaake05g060300 |
| Inversion | Chr5 | 5605423 | 5645551 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 5126376 | Chr5 | 15418312 |