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Mutant Information

Mutant Name	FN3797-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3797-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15347729 G-A Hetero INTERGENIC
SBS Chr1 25491131 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g247300
SBS Chr1 32566223 C-A Hetero INTERGENIC
SBS Chr1 39640006 C-T Hetero INTERGENIC
SBS Chr2 20381179 T-C Hetero INTERGENIC
SBS Chr2 29228508 G-A Hetero INTERGENIC
SBS Chr3 20845069 G-A Hetero INTERGENIC
SBS Chr3 27875175 G-A Hetero INTERGENIC
SBS Chr4 1134027 T-C Hetero INTERGENIC
SBS Chr4 14703836 G-T Homo INTERGENIC
SBS Chr4 15908051 G-A Homo INTERGENIC
SBS Chr4 24592708 G-A Homo INTERGENIC
SBS Chr5 12889003 G-A Hetero INTERGENIC
SBS Chr6 1531859 A-C Hetero INTRON
SBS Chr6 18363164 A-T Hetero INTRON
SBS Chr6 19351630 G-A Hetero INTERGENIC
SBS Chr8 22499028 C-T Hetero INTERGENIC
SBS Chr9 2605061 T-C Hetero INTERGENIC
SBS Chr9 8332856 T-C Hetero INTERGENIC
SBS Chr10 14092804 C-T Homo INTERGENIC
SBS Chr10 19595538 T-A Hetero INTERGENIC
SBS Chr11 1451302 A-T Hetero INTERGENIC
SBS Chr11 1742294 T-C Hetero INTERGENIC
SBS Chr11 1742299 C-G Hetero INTERGENIC
SBS Chr12 27143196 G-A Hetero #VALUE!

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 183728 183731 3 OsKitaake05g001900
Deletion Chr3 6329330 6329344 14
Deletion Chr4 6464988 6464991 3
Deletion Chr1 9948959 9948961 2
Deletion Chr7 11259970 11259971 1
Deletion Chr7 15726217 15726224 7
Deletion Chr1 25811001 25945000 133999 9

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17314186 17314189 2
Insertion Chr7 4684812 4684815 2
Insertion Chr8 23919313 23919315 1
Insertion Chr9 7905022 7905025 2
Insertion Chr4 24909011 24909013 1
Insertion Chr12 11211139 11211141 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 26332833 26471087 OsKitaake07g244500
Inversion Chr7 26332834 26471064 OsKitaake07g244500

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 15223629 Chr3 23351986 OsKitaake04g073100
Translocation Chr4 15223638 Chr3 23352277 OsKitaake04g073100
Translocation Chr10 23307455 Chr7 25099980 2
Translocation Chr10 23407699 Chr7 25099952 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15347729	G-A	Hetero	INTERGENIC
SBS	Chr1	25491131	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g247300
SBS	Chr1	32566223	C-A	Hetero	INTERGENIC
SBS	Chr1	39640006	C-T	Hetero	INTERGENIC
SBS	Chr2	20381179	T-C	Hetero	INTERGENIC
SBS	Chr2	29228508	G-A	Hetero	INTERGENIC
SBS	Chr3	20845069	G-A	Hetero	INTERGENIC
SBS	Chr3	27875175	G-A	Hetero	INTERGENIC
SBS	Chr4	1134027	T-C	Hetero	INTERGENIC
SBS	Chr4	14703836	G-T	Homo	INTERGENIC
SBS	Chr4	15908051	G-A	Homo	INTERGENIC
SBS	Chr4	24592708	G-A	Homo	INTERGENIC
SBS	Chr5	12889003	G-A	Hetero	INTERGENIC
SBS	Chr6	1531859	A-C	Hetero	INTRON
SBS	Chr6	18363164	A-T	Hetero	INTRON
SBS	Chr6	19351630	G-A	Hetero	INTERGENIC
SBS	Chr8	22499028	C-T	Hetero	INTERGENIC
SBS	Chr9	2605061	T-C	Hetero	INTERGENIC
SBS	Chr9	8332856	T-C	Hetero	INTERGENIC
SBS	Chr10	14092804	C-T	Homo	INTERGENIC
SBS	Chr10	19595538	T-A	Hetero	INTERGENIC
SBS	Chr11	1451302	A-T	Hetero	INTERGENIC
SBS	Chr11	1742294	T-C	Hetero	INTERGENIC
SBS	Chr11	1742299	C-G	Hetero	INTERGENIC
SBS	Chr12	27143196	G-A	Hetero	#VALUE!

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	183728	183731	3	OsKitaake05g001900
Deletion	Chr3	6329330	6329344	14
Deletion	Chr4	6464988	6464991	3
Deletion	Chr1	9948959	9948961	2
Deletion	Chr7	11259970	11259971	1
Deletion	Chr7	15726217	15726224	7
Deletion	Chr1	25811001	25945000	133999	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	26332833	26471087	OsKitaake07g244500
Inversion	Chr7	26332834	26471064	OsKitaake07g244500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes