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Mutant Information

Mutant Name	FN3798-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3798-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13138648 G-A Hetero INTERGENIC
SBS Chr1 40347568 T-A Hetero INTRON
SBS Chr2 20189 C-A Hetero SYNONYMOUS_CODING
SBS Chr2 2177786 G-A Hetero INTRON
SBS Chr2 11887866 G-A Hetero INTERGENIC
SBS Chr2 16855584 C-T Hetero INTERGENIC
SBS Chr2 32878520 G-C Homo INTERGENIC
SBS Chr2 36245691 G-A Homo INTERGENIC
SBS Chr3 16915414 G-A Hetero INTRON
SBS Chr3 18738189 G-A Hetero INTRON
SBS Chr3 27389227 C-T Homo INTERGENIC
SBS Chr4 8110647 T-C Hetero INTERGENIC
SBS Chr4 27345869 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 30315586 G-T Hetero INTERGENIC
SBS Chr4 34623220 G-A Hetero INTRON
SBS Chr5 4414226 A-G Hetero INTERGENIC
SBS Chr5 9586055 C-T Hetero INTERGENIC
SBS Chr5 14258960 A-G Homo INTERGENIC
SBS Chr5 22788809 G-A Hetero INTERGENIC
SBS Chr5 29180880 C-T Hetero INTERGENIC
SBS Chr6 18131171 C-A Homo INTERGENIC
SBS Chr6 29787293 C-T Hetero INTERGENIC
SBS Chr7 9296167 A-C Hetero INTERGENIC
SBS Chr7 9761008 A-T Homo INTERGENIC
SBS Chr7 10802982 T-C Homo INTERGENIC
SBS Chr7 22135029 G-A Hetero INTERGENIC
SBS Chr7 25865677 C-A Hetero INTERGENIC
SBS Chr8 5956317 C-T Hetero INTERGENIC
SBS Chr8 11231852 T-A Hetero INTRON
SBS Chr8 21354497 G-T Hetero UTR_5_PRIME
SBS Chr9 6504817 G-T Homo INTERGENIC
SBS Chr9 11315672 G-C Hetero INTERGENIC
SBS Chr9 15796107 T-C Homo INTRON
SBS Chr9 21350415 G-A Homo INTERGENIC
SBS Chr10 675071 G-A Hetero INTERGENIC
SBS Chr11 2380595 A-G Hetero UTR_3_PRIME
SBS Chr11 18080984 T-C Hetero INTERGENIC
SBS Chr11 22896029 C-T Hetero INTERGENIC
SBS Chr11 24902521 T-A Hetero INTERGENIC
SBS Chr12 4367839 A-G Hetero INTERGENIC
SBS Chr12 21176702 A-G Hetero INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 7742001 7805000 62999 4
Deletion Chr4 8856582 8856586 4 OsKitaake04g045700
Deletion Chr1 8980457 8980459 2
Deletion Chr9 9387365 9387374 9
Deletion Chr5 9470613 9470630 17
Deletion Chr2 17621105 17621111 6
Deletion Chr11 20035001 20080000 44999 OsKitaake11g157328
Deletion Chr6 23033833 23033967 134
Deletion Chr11 29378689 29378695 6
Deletion Chr2 33618865 33618875 10
Deletion Chr1 37088914 37088923 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 12851051 12851054 2
Insertion Chr3 16528056 16528062 5
Insertion Chr4 17232526 17232529 2
Insertion Chr5 30228616 30228624 7

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 6315217 7004564 OsKitaake11g080300
Inversion Chr11 6315222 7004577 OsKitaake11g080300
Inversion Chr4 7741710 7815135 2
Inversion Chr4 7805044 7815136 OsKitaake04g039700

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8916437 Chr4 34624580 OsKitaake04g289100
Translocation Chr8 21828929 Chr3 32467912 OsKitaake03g343900
Translocation Chr8 21829244 Chr3 33535800 OsKitaake03g359400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13138648	G-A	Hetero	INTERGENIC
SBS	Chr1	40347568	T-A	Hetero	INTRON
SBS	Chr2	20189	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	2177786	G-A	Hetero	INTRON
SBS	Chr2	11887866	G-A	Hetero	INTERGENIC
SBS	Chr2	16855584	C-T	Hetero	INTERGENIC
SBS	Chr2	32878520	G-C	Homo	INTERGENIC
SBS	Chr2	36245691	G-A	Homo	INTERGENIC
SBS	Chr3	16915414	G-A	Hetero	INTRON
SBS	Chr3	18738189	G-A	Hetero	INTRON
SBS	Chr3	27389227	C-T	Homo	INTERGENIC
SBS	Chr4	8110647	T-C	Hetero	INTERGENIC
SBS	Chr4	27345869	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	30315586	G-T	Hetero	INTERGENIC
SBS	Chr4	34623220	G-A	Hetero	INTRON
SBS	Chr5	4414226	A-G	Hetero	INTERGENIC
SBS	Chr5	9586055	C-T	Hetero	INTERGENIC
SBS	Chr5	14258960	A-G	Homo	INTERGENIC
SBS	Chr5	22788809	G-A	Hetero	INTERGENIC
SBS	Chr5	29180880	C-T	Hetero	INTERGENIC
SBS	Chr6	18131171	C-A	Homo	INTERGENIC
SBS	Chr6	29787293	C-T	Hetero	INTERGENIC
SBS	Chr7	9296167	A-C	Hetero	INTERGENIC
SBS	Chr7	9761008	A-T	Homo	INTERGENIC
SBS	Chr7	10802982	T-C	Homo	INTERGENIC
SBS	Chr7	22135029	G-A	Hetero	INTERGENIC
SBS	Chr7	25865677	C-A	Hetero	INTERGENIC
SBS	Chr8	5956317	C-T	Hetero	INTERGENIC
SBS	Chr8	11231852	T-A	Hetero	INTRON
SBS	Chr8	21354497	G-T	Hetero	UTR_5_PRIME
SBS	Chr9	6504817	G-T	Homo	INTERGENIC
SBS	Chr9	11315672	G-C	Hetero	INTERGENIC
SBS	Chr9	15796107	T-C	Homo	INTRON
SBS	Chr9	21350415	G-A	Homo	INTERGENIC
SBS	Chr10	675071	G-A	Hetero	INTERGENIC
SBS	Chr11	2380595	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	18080984	T-C	Hetero	INTERGENIC
SBS	Chr11	22896029	C-T	Hetero	INTERGENIC
SBS	Chr11	24902521	T-A	Hetero	INTERGENIC
SBS	Chr12	4367839	A-G	Hetero	INTERGENIC
SBS	Chr12	21176702	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	7742001	7805000	62999	4
Deletion	Chr4	8856582	8856586	4	OsKitaake04g045700
Deletion	Chr1	8980457	8980459	2
Deletion	Chr9	9387365	9387374	9
Deletion	Chr5	9470613	9470630	17
Deletion	Chr2	17621105	17621111	6
Deletion	Chr11	20035001	20080000	44999	OsKitaake11g157328
Deletion	Chr6	23033833	23033967	134
Deletion	Chr11	29378689	29378695	6
Deletion	Chr2	33618865	33618875	10
Deletion	Chr1	37088914	37088923	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6315217	7004564	OsKitaake11g080300
Inversion	Chr11	6315222	7004577	OsKitaake11g080300
Inversion	Chr4	7741710	7815135	2
Inversion	Chr4	7805044	7815136	OsKitaake04g039700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes