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Mutant Information

Mutant Name	FN3800-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3800-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3565749 C-T Hetero INTRON
SBS Chr1 5400747 G-A Hetero INTRON
SBS Chr1 13416455 G-A Homo INTERGENIC
SBS Chr1 27452954 G-A Hetero INTERGENIC
SBS Chr1 42501932 A-G Hetero INTRON
SBS Chr2 14345295 G-T Hetero INTERGENIC
SBS Chr2 14647299 C-T Hetero INTERGENIC
SBS Chr2 21331191 C-T Hetero INTERGENIC
SBS Chr2 25470701 T-A Homo INTRON
SBS Chr2 28741110 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g289200
SBS Chr3 12776414 G-A Hetero SYNONYMOUS_STOP
SBS Chr3 28296112 C-T Hetero INTERGENIC
SBS Chr4 3810911 C-A Hetero INTERGENIC
SBS Chr4 6771929 G-A Hetero INTERGENIC
SBS Chr4 9674974 G-A Hetero INTERGENIC
SBS Chr4 10182340 C-T Hetero INTERGENIC
SBS Chr4 14802194 C-G Homo INTERGENIC
SBS Chr4 16968913 C-T Hetero INTERGENIC
SBS Chr4 17227967 G-A Homo INTERGENIC
SBS Chr4 25879478 C-T Hetero INTRON
SBS Chr4 32048191 G-A Hetero INTERGENIC
SBS Chr4 33320828 G-A Hetero INTERGENIC
SBS Chr4 33320831 A-T Hetero INTERGENIC
SBS Chr4 36057737 C-T Hetero UTR_5_PRIME
SBS Chr5 6005612 T-C Hetero UTR_5_PRIME
SBS Chr5 12839996 T-C Homo INTRON
SBS Chr5 19080226 G-A Homo INTERGENIC
SBS Chr6 17594396 T-A Homo INTERGENIC
SBS Chr6 17615062 A-G Homo UTR_3_PRIME
SBS Chr7 3203824 G-A Hetero UTR_5_PRIME
SBS Chr7 18004108 A-T Hetero UTR_3_PRIME
SBS Chr7 19109253 C-A Hetero INTERGENIC
SBS Chr8 9738297 A-G Hetero INTERGENIC
SBS Chr8 9741959 T-C Hetero INTERGENIC
SBS Chr8 13050610 C-T Hetero INTERGENIC
SBS Chr8 17274750 G-A Homo INTERGENIC
SBS Chr8 28615667 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g245400
SBS Chr9 1032239 C-T Hetero INTERGENIC
SBS Chr9 4880282 C-T Hetero INTERGENIC
SBS Chr9 7379586 C-T Hetero INTERGENIC
SBS Chr9 13950305 C-T Hetero INTERGENIC
SBS Chr9 14291634 A-T Homo INTERGENIC
SBS Chr9 14291635 G-T Homo INTERGENIC
SBS Chr9 20639792 T-A Hetero INTERGENIC
SBS Chr10 6498425 A-G Hetero INTERGENIC
SBS Chr10 9581876 G-A Hetero INTERGENIC
SBS Chr10 13896344 A-T Hetero INTERGENIC
SBS Chr10 16840240 G-A Hetero INTERGENIC
SBS Chr10 23828018 A-G Hetero INTERGENIC
SBS Chr11 3137455 C-T Hetero INTRON
SBS Chr11 5694178 C-A Hetero INTRON
SBS Chr11 10575936 T-G Hetero INTRON
SBS Chr11 12543941 T-C Hetero INTERGENIC
SBS Chr11 18315439 A-G Hetero INTERGENIC
SBS Chr11 18315440 G-A Hetero INTERGENIC
SBS Chr11 26872588 T-A Hetero INTERGENIC
SBS Chr12 3757535 G-T Hetero INTERGENIC
SBS Chr12 17826605 G-A Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 156979 156981 2
Deletion Chr8 627005 627014 9
Deletion Chr8 966451 966460 9
Deletion Chr11 2106894 2106901 7
Deletion Chr4 3425128 3425132 4
Deletion Chr4 3463818 3463819 1
Deletion Chr3 4322793 4322794 1
Deletion Chr8 7763940 7763943 3
Deletion Chr1 8008321 8008322 1
Deletion Chr7 8223674 8223676 2
Deletion Chr9 8831186 8831200 14
Deletion Chr5 9318062 9318066 4
Deletion Chr7 10043527 10043542 15
Deletion Chr11 15130717 15130719 2
Deletion Chr7 15302070 15302071 1
Deletion Chr2 15379026 15379027 1
Deletion Chr7 16258249 16258271 22
Deletion Chr11 18316005 18316006 1
Deletion Chr10 22439413 22439415 2
Deletion Chr7 23244459 23244464 5
Deletion Chr12 23770827 23770828 1
Deletion Chr5 25583341 25583342 1
Deletion Chr5 29302273 29302277 4 OsKitaake05g278201
Deletion Chr4 31403575 31403579 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15986072 15986075 2
Insertion Chr12 4332638 4332640 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3565749	C-T	Hetero	INTRON
SBS	Chr1	5400747	G-A	Hetero	INTRON
SBS	Chr1	13416455	G-A	Homo	INTERGENIC
SBS	Chr1	27452954	G-A	Hetero	INTERGENIC
SBS	Chr1	42501932	A-G	Hetero	INTRON
SBS	Chr2	14345295	G-T	Hetero	INTERGENIC
SBS	Chr2	14647299	C-T	Hetero	INTERGENIC
SBS	Chr2	21331191	C-T	Hetero	INTERGENIC
SBS	Chr2	25470701	T-A	Homo	INTRON
SBS	Chr2	28741110	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g289200
SBS	Chr3	12776414	G-A	Hetero	SYNONYMOUS_STOP
SBS	Chr3	28296112	C-T	Hetero	INTERGENIC
SBS	Chr4	3810911	C-A	Hetero	INTERGENIC
SBS	Chr4	6771929	G-A	Hetero	INTERGENIC
SBS	Chr4	9674974	G-A	Hetero	INTERGENIC
SBS	Chr4	10182340	C-T	Hetero	INTERGENIC
SBS	Chr4	14802194	C-G	Homo	INTERGENIC
SBS	Chr4	16968913	C-T	Hetero	INTERGENIC
SBS	Chr4	17227967	G-A	Homo	INTERGENIC
SBS	Chr4	25879478	C-T	Hetero	INTRON
SBS	Chr4	32048191	G-A	Hetero	INTERGENIC
SBS	Chr4	33320828	G-A	Hetero	INTERGENIC
SBS	Chr4	33320831	A-T	Hetero	INTERGENIC
SBS	Chr4	36057737	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	6005612	T-C	Hetero	UTR_5_PRIME
SBS	Chr5	12839996	T-C	Homo	INTRON
SBS	Chr5	19080226	G-A	Homo	INTERGENIC
SBS	Chr6	17594396	T-A	Homo	INTERGENIC
SBS	Chr6	17615062	A-G	Homo	UTR_3_PRIME
SBS	Chr7	3203824	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	18004108	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	19109253	C-A	Hetero	INTERGENIC
SBS	Chr8	9738297	A-G	Hetero	INTERGENIC
SBS	Chr8	9741959	T-C	Hetero	INTERGENIC
SBS	Chr8	13050610	C-T	Hetero	INTERGENIC
SBS	Chr8	17274750	G-A	Homo	INTERGENIC
SBS	Chr8	28615667	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g245400
SBS	Chr9	1032239	C-T	Hetero	INTERGENIC
SBS	Chr9	4880282	C-T	Hetero	INTERGENIC
SBS	Chr9	7379586	C-T	Hetero	INTERGENIC
SBS	Chr9	13950305	C-T	Hetero	INTERGENIC
SBS	Chr9	14291634	A-T	Homo	INTERGENIC
SBS	Chr9	14291635	G-T	Homo	INTERGENIC
SBS	Chr9	20639792	T-A	Hetero	INTERGENIC
SBS	Chr10	6498425	A-G	Hetero	INTERGENIC
SBS	Chr10	9581876	G-A	Hetero	INTERGENIC
SBS	Chr10	13896344	A-T	Hetero	INTERGENIC
SBS	Chr10	16840240	G-A	Hetero	INTERGENIC
SBS	Chr10	23828018	A-G	Hetero	INTERGENIC
SBS	Chr11	3137455	C-T	Hetero	INTRON
SBS	Chr11	5694178	C-A	Hetero	INTRON
SBS	Chr11	10575936	T-G	Hetero	INTRON
SBS	Chr11	12543941	T-C	Hetero	INTERGENIC
SBS	Chr11	18315439	A-G	Hetero	INTERGENIC
SBS	Chr11	18315440	G-A	Hetero	INTERGENIC
SBS	Chr11	26872588	T-A	Hetero	INTERGENIC
SBS	Chr12	3757535	G-T	Hetero	INTERGENIC
SBS	Chr12	17826605	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	156979	156981	2
Deletion	Chr8	627005	627014	9
Deletion	Chr8	966451	966460	9
Deletion	Chr11	2106894	2106901	7
Deletion	Chr4	3425128	3425132	4
Deletion	Chr4	3463818	3463819	1
Deletion	Chr3	4322793	4322794	1
Deletion	Chr8	7763940	7763943	3
Deletion	Chr1	8008321	8008322	1
Deletion	Chr7	8223674	8223676	2
Deletion	Chr9	8831186	8831200	14
Deletion	Chr5	9318062	9318066	4
Deletion	Chr7	10043527	10043542	15
Deletion	Chr11	15130717	15130719	2
Deletion	Chr7	15302070	15302071	1
Deletion	Chr2	15379026	15379027	1
Deletion	Chr7	16258249	16258271	22
Deletion	Chr11	18316005	18316006	1
Deletion	Chr10	22439413	22439415	2
Deletion	Chr7	23244459	23244464	5
Deletion	Chr12	23770827	23770828	1
Deletion	Chr5	25583341	25583342	1
Deletion	Chr5	29302273	29302277	4	OsKitaake05g278201
Deletion	Chr4	31403575	31403579	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes