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Mutant Information

Mutant Name	FN3801-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3801-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12193942 T-G Hetero INTERGENIC
SBS Chr1 21253384 G-T Hetero INTERGENIC
SBS Chr1 39114650 G-T Hetero INTERGENIC
SBS Chr2 8000989 T-A Hetero INTERGENIC
SBS Chr4 33472 C-G Homo INTERGENIC
SBS Chr4 3675994 G-A Hetero INTERGENIC
SBS Chr4 5657206 T-C Hetero INTERGENIC
SBS Chr4 12091203 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g058600
SBS Chr4 36740771 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g320100
SBS Chr5 5701281 C-T Homo INTERGENIC
SBS Chr5 21458887 C-T Hetero INTERGENIC
SBS Chr5 28361996 G-A Hetero INTRON
SBS Chr6 29086700 A-G Hetero INTERGENIC
SBS Chr7 23123526 T-A Homo STOP_GAINED OsKitaake07g199200
SBS Chr8 1650988 T-C Hetero INTERGENIC
SBS Chr9 14216824 T-A Hetero INTERGENIC
SBS Chr9 14230214 G-A Hetero INTERGENIC
SBS Chr10 9541112 G-A Hetero INTERGENIC
SBS Chr11 13115296 G-A Homo INTERGENIC
SBS Chr11 18430105 T-G Homo INTERGENIC
SBS Chr12 17547344 T-C Hetero INTERGENIC
SBS Chr12 18472860 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1150741 1150742 1
Deletion Chr4 4758001 4972000 213999 5
Deletion Chr5 6498024 6498026 2
Deletion Chr4 6848117 6848118 1
Deletion Chr6 8442180 8442185 5
Deletion Chr5 8523695 8523697 2
Deletion Chr6 9373961 9373969 8
Deletion Chr5 11686892 11686898 6
Deletion Chr10 12123001 13271000 1147999 88
Deletion Chr3 16370513 16370525 12
Deletion Chr3 19272001 19290000 17999
Deletion Chr11 24255676 24255691 15
Deletion Chr1 25425861 25425872 11
Deletion Chr12 25510380 25510382 2
Deletion Chr6 27536936 27536940 4
Deletion Chr6 29779908 29779911 3 OsKitaake06g278200
Deletion Chr1 34998394 34998397 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18217548 18217553 4

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 12839349 13042027
Inversion Chr1 20440552 20451253
Inversion Chr7 21506587 21515797
Inversion Chr7 21506592 21515797
Inversion Chr4 26615787 27495368 OsKitaake04g201000
Inversion Chr4 26615808 27495380 OsKitaake04g201000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 12127498 Chr3 19288316

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12193942	T-G	Hetero	INTERGENIC
SBS	Chr1	21253384	G-T	Hetero	INTERGENIC
SBS	Chr1	39114650	G-T	Hetero	INTERGENIC
SBS	Chr2	8000989	T-A	Hetero	INTERGENIC
SBS	Chr4	33472	C-G	Homo	INTERGENIC
SBS	Chr4	3675994	G-A	Hetero	INTERGENIC
SBS	Chr4	5657206	T-C	Hetero	INTERGENIC
SBS	Chr4	12091203	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g058600
SBS	Chr4	36740771	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g320100
SBS	Chr5	5701281	C-T	Homo	INTERGENIC
SBS	Chr5	21458887	C-T	Hetero	INTERGENIC
SBS	Chr5	28361996	G-A	Hetero	INTRON
SBS	Chr6	29086700	A-G	Hetero	INTERGENIC
SBS	Chr7	23123526	T-A	Homo	STOP_GAINED	OsKitaake07g199200
SBS	Chr8	1650988	T-C	Hetero	INTERGENIC
SBS	Chr9	14216824	T-A	Hetero	INTERGENIC
SBS	Chr9	14230214	G-A	Hetero	INTERGENIC
SBS	Chr10	9541112	G-A	Hetero	INTERGENIC
SBS	Chr11	13115296	G-A	Homo	INTERGENIC
SBS	Chr11	18430105	T-G	Homo	INTERGENIC
SBS	Chr12	17547344	T-C	Hetero	INTERGENIC
SBS	Chr12	18472860	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1150741	1150742	1
Deletion	Chr4	4758001	4972000	213999	5
Deletion	Chr5	6498024	6498026	2
Deletion	Chr4	6848117	6848118	1
Deletion	Chr6	8442180	8442185	5
Deletion	Chr5	8523695	8523697	2
Deletion	Chr6	9373961	9373969	8
Deletion	Chr5	11686892	11686898	6
Deletion	Chr10	12123001	13271000	1147999	88
Deletion	Chr3	16370513	16370525	12
Deletion	Chr3	19272001	19290000	17999
Deletion	Chr11	24255676	24255691	15
Deletion	Chr1	25425861	25425872	11
Deletion	Chr12	25510380	25510382	2
Deletion	Chr6	27536936	27536940	4
Deletion	Chr6	29779908	29779911	3	OsKitaake06g278200
Deletion	Chr1	34998394	34998397	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	12839349	13042027
Inversion	Chr1	20440552	20451253
Inversion	Chr7	21506587	21515797
Inversion	Chr7	21506592	21515797
Inversion	Chr4	26615787	27495368	OsKitaake04g201000
Inversion	Chr4	26615808	27495380	OsKitaake04g201000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes