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Mutant Information

Mutant Name	FN3802-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3802-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13696480 G-T Hetero INTERGENIC
SBS Chr1 44199184 G-T Homo INTERGENIC
SBS Chr2 31201741 G-A Hetero INTERGENIC
SBS Chr2 31839037 T-A Hetero INTERGENIC
SBS Chr3 12470826 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g168400
SBS Chr3 30795037 G-T Homo INTERGENIC
SBS Chr3 30795038 G-T Homo INTERGENIC
SBS Chr4 2908122 A-T Hetero INTERGENIC
SBS Chr4 14337323 C-A Homo INTERGENIC
SBS Chr4 16024894 C-T Homo INTERGENIC
SBS Chr4 24745562 T-A Hetero INTRON
SBS Chr4 28325784 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g211100
SBS Chr4 28325788 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g211100
SBS Chr4 28325791 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 15441976 T-A Hetero INTERGENIC
SBS Chr6 6073752 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g080000
SBS Chr7 18008750 C-A Homo INTERGENIC
SBS Chr7 18728449 A-T Hetero INTERGENIC
SBS Chr8 6017755 C-A Hetero INTRON
SBS Chr8 12694421 T-A Hetero INTERGENIC
SBS Chr8 13785799 C-T Hetero INTERGENIC
SBS Chr9 7209730 C-A Homo INTERGENIC
SBS Chr9 11138224 C-T Homo INTERGENIC
SBS Chr9 17313250 C-T Hetero INTERGENIC
SBS Chr10 668985 C-A Hetero INTERGENIC
SBS Chr10 3435455 G-A Hetero INTERGENIC
SBS Chr11 8630199 A-G Homo INTERGENIC
SBS Chr12 5877266 C-A Hetero UTR_5_PRIME
SBS Chr12 24935322 C-T Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 909057 909060 3
Deletion Chr4 4051433 4051448 15
Deletion Chr12 4532824 4532836 12
Deletion Chr8 5208142 5208143 1
Deletion Chr8 5931448 5931454 6
Deletion Chr8 5938981 5938982 1
Deletion Chr10 8026449 8026456 7
Deletion Chr3 12435452 12435453 1
Deletion Chr11 12459798 12459799 1
Deletion Chr4 13634188 13634189 1
Deletion Chr4 13901001 13919000 17999
Deletion Chr7 14128001 14165000 36999 OsKitaake07g122200
Deletion Chr7 14955229 14955237 8
Deletion Chr4 15124870 15124875 5
Deletion Chr7 15454801 15454811 10
Deletion Chr4 15944320 15944323 3
Deletion Chr9 16345722 16345743 21
Deletion Chr2 16653483 16653484 1
Deletion Chr6 18593221 18593229 8
Deletion Chr9 20264762 20264764 2
Deletion Chr11 20344909 20344915 6
Deletion Chr9 20540947 20540958 11
Deletion Chr8 25153568 25153573 5
Deletion Chr6 27197189 27197192 3
Deletion Chr6 29136797 29136801 4
Deletion Chr2 29606620 29606627 7
Deletion Chr3 30690139 30690140 1 OsKitaake03g322600
Deletion Chr1 34513196 34513219 23

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 11337351 11337356 4
Insertion Chr6 16213398 16213400 1
Insertion Chr11 13867692 13867701 8
Insertion Chr2 25139969 25139971 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 8292943 8330275
Inversion Chr5 8292944 8330276
Inversion Chr7 14128118 14165834 OsKitaake07g122300
Inversion Chr7 14165878 14972320 OsKitaake07g122300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 2707744 Chr2 11060933 2
Translocation Chr6 2708359 Chr2 11060933 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13696480	G-T	Hetero	INTERGENIC
SBS	Chr1	44199184	G-T	Homo	INTERGENIC
SBS	Chr2	31201741	G-A	Hetero	INTERGENIC
SBS	Chr2	31839037	T-A	Hetero	INTERGENIC
SBS	Chr3	12470826	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g168400
SBS	Chr3	30795037	G-T	Homo	INTERGENIC
SBS	Chr3	30795038	G-T	Homo	INTERGENIC
SBS	Chr4	2908122	A-T	Hetero	INTERGENIC
SBS	Chr4	14337323	C-A	Homo	INTERGENIC
SBS	Chr4	16024894	C-T	Homo	INTERGENIC
SBS	Chr4	24745562	T-A	Hetero	INTRON
SBS	Chr4	28325784	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g211100
SBS	Chr4	28325788	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g211100
SBS	Chr4	28325791	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	15441976	T-A	Hetero	INTERGENIC
SBS	Chr6	6073752	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g080000
SBS	Chr7	18008750	C-A	Homo	INTERGENIC
SBS	Chr7	18728449	A-T	Hetero	INTERGENIC
SBS	Chr8	6017755	C-A	Hetero	INTRON
SBS	Chr8	12694421	T-A	Hetero	INTERGENIC
SBS	Chr8	13785799	C-T	Hetero	INTERGENIC
SBS	Chr9	7209730	C-A	Homo	INTERGENIC
SBS	Chr9	11138224	C-T	Homo	INTERGENIC
SBS	Chr9	17313250	C-T	Hetero	INTERGENIC
SBS	Chr10	668985	C-A	Hetero	INTERGENIC
SBS	Chr10	3435455	G-A	Hetero	INTERGENIC
SBS	Chr11	8630199	A-G	Homo	INTERGENIC
SBS	Chr12	5877266	C-A	Hetero	UTR_5_PRIME
SBS	Chr12	24935322	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	909057	909060	3
Deletion	Chr4	4051433	4051448	15
Deletion	Chr12	4532824	4532836	12
Deletion	Chr8	5208142	5208143	1
Deletion	Chr8	5931448	5931454	6
Deletion	Chr8	5938981	5938982	1
Deletion	Chr10	8026449	8026456	7
Deletion	Chr3	12435452	12435453	1
Deletion	Chr11	12459798	12459799	1
Deletion	Chr4	13634188	13634189	1
Deletion	Chr4	13901001	13919000	17999
Deletion	Chr7	14128001	14165000	36999	OsKitaake07g122200
Deletion	Chr7	14955229	14955237	8
Deletion	Chr4	15124870	15124875	5
Deletion	Chr7	15454801	15454811	10
Deletion	Chr4	15944320	15944323	3
Deletion	Chr9	16345722	16345743	21
Deletion	Chr2	16653483	16653484	1
Deletion	Chr6	18593221	18593229	8
Deletion	Chr9	20264762	20264764	2
Deletion	Chr11	20344909	20344915	6
Deletion	Chr9	20540947	20540958	11
Deletion	Chr8	25153568	25153573	5
Deletion	Chr6	27197189	27197192	3
Deletion	Chr6	29136797	29136801	4
Deletion	Chr2	29606620	29606627	7
Deletion	Chr3	30690139	30690140	1	OsKitaake03g322600
Deletion	Chr1	34513196	34513219	23

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	8292943	8330275
Inversion	Chr5	8292944	8330276
Inversion	Chr7	14128118	14165834	OsKitaake07g122300
Inversion	Chr7	14165878	14972320	OsKitaake07g122300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes