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Mutant Information

Mutant Name	FN3803-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3803-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12695472 C-T Homo INTRON
SBS Chr1 25605022 G-C Homo UTR_5_PRIME
SBS Chr2 3554578 T-A Hetero INTERGENIC
SBS Chr2 7108387 C-G Hetero INTRON
SBS Chr2 7108388 G-A Hetero INTRON
SBS Chr3 19376459 G-A Hetero INTERGENIC
SBS Chr3 26877238 T-C Homo INTERGENIC
SBS Chr3 27420197 T-G Homo INTRON
SBS Chr4 2419982 C-T Homo INTERGENIC
SBS Chr4 7054525 T-A Homo INTERGENIC
SBS Chr4 7269276 G-T Homo INTERGENIC
SBS Chr4 15170594 T-C Homo INTERGENIC
SBS Chr4 29159947 T-C Hetero INTERGENIC
SBS Chr4 29161608 A-T Hetero INTERGENIC
SBS Chr4 32218369 G-A Hetero INTERGENIC
SBS Chr4 35856426 G-A Hetero INTERGENIC
SBS Chr5 14126009 T-C Hetero INTERGENIC
SBS Chr5 28068942 G-C Hetero INTRON
SBS Chr5 29314357 C-T Hetero INTERGENIC
SBS Chr6 25623958 G-A Hetero INTERGENIC
SBS Chr7 2753993 T-A Hetero INTRON
SBS Chr7 10649231 G-A Hetero INTRON
SBS Chr7 12776152 C-T Hetero INTERGENIC
SBS Chr7 20140629 A-G Hetero INTRON
SBS Chr8 454570 G-A Hetero INTRON
SBS Chr8 2241351 C-T Hetero INTERGENIC
SBS Chr8 5493433 T-A Homo INTERGENIC
SBS Chr8 12406495 A-G Homo INTERGENIC
SBS Chr8 15171412 C-T Hetero INTERGENIC
SBS Chr8 25011285 C-A Hetero INTERGENIC
SBS Chr9 6118427 A-T Hetero INTERGENIC
SBS Chr9 11528608 C-T Hetero INTERGENIC
SBS Chr9 19657312 G-T Homo INTERGENIC
SBS Chr10 2246402 G-A Homo NON_SYNONYMOUS_CODING OsKitaake10g017900
SBS Chr11 24205675 C-G Hetero INTERGENIC
SBS Chr11 27086835 A-G Hetero INTERGENIC
SBS Chr11 29715779 C-T Hetero INTRON
SBS Chr12 22481758 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g176001

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 561563 561594 31 OsKitaake12g007100
Deletion Chr9 2832223 2832235 12
Deletion Chr7 7776814 7776822 8
Deletion Chr12 10610331 10610337 6
Deletion Chr7 10878922 10878923 1
Deletion Chr7 10946012 10946021 9
Deletion Chr11 12948791 12948792 1
Deletion Chr12 21185605 21185608 3
Deletion Chr12 22481675 22481676 1
Deletion Chr6 25871636 25871637 1
Deletion Chr12 26004677 26004689 12
Deletion Chr4 26133595 26133601 6
Deletion Chr6 26392314 26392316 2
Deletion Chr3 26898305 26898307 2
Deletion Chr2 26957473 26957482 9
Deletion Chr6 26964738 26964755 17
Deletion Chr1 29238144 29238155 11
Deletion Chr3 36238687 36238695 8 OsKitaake03g401300
Deletion Chr1 38672223 38672234 11 OsKitaake01g413200

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38161965 38161968 2
Insertion Chr3 8123615 8123618 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6312670 7000429 OsKitaake07g079200
Inversion Chr7 6765504 7000435 OsKitaake07g079200
Inversion Chr4 28809782 29170505 OsKitaake04g221400
Inversion Chr4 29097955 29162131 OsKitaake04g219900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12695472	C-T	Homo	INTRON
SBS	Chr1	25605022	G-C	Homo	UTR_5_PRIME
SBS	Chr2	3554578	T-A	Hetero	INTERGENIC
SBS	Chr2	7108387	C-G	Hetero	INTRON
SBS	Chr2	7108388	G-A	Hetero	INTRON
SBS	Chr3	19376459	G-A	Hetero	INTERGENIC
SBS	Chr3	26877238	T-C	Homo	INTERGENIC
SBS	Chr3	27420197	T-G	Homo	INTRON
SBS	Chr4	2419982	C-T	Homo	INTERGENIC
SBS	Chr4	7054525	T-A	Homo	INTERGENIC
SBS	Chr4	7269276	G-T	Homo	INTERGENIC
SBS	Chr4	15170594	T-C	Homo	INTERGENIC
SBS	Chr4	29159947	T-C	Hetero	INTERGENIC
SBS	Chr4	29161608	A-T	Hetero	INTERGENIC
SBS	Chr4	32218369	G-A	Hetero	INTERGENIC
SBS	Chr4	35856426	G-A	Hetero	INTERGENIC
SBS	Chr5	14126009	T-C	Hetero	INTERGENIC
SBS	Chr5	28068942	G-C	Hetero	INTRON
SBS	Chr5	29314357	C-T	Hetero	INTERGENIC
SBS	Chr6	25623958	G-A	Hetero	INTERGENIC
SBS	Chr7	2753993	T-A	Hetero	INTRON
SBS	Chr7	10649231	G-A	Hetero	INTRON
SBS	Chr7	12776152	C-T	Hetero	INTERGENIC
SBS	Chr7	20140629	A-G	Hetero	INTRON
SBS	Chr8	454570	G-A	Hetero	INTRON
SBS	Chr8	2241351	C-T	Hetero	INTERGENIC
SBS	Chr8	5493433	T-A	Homo	INTERGENIC
SBS	Chr8	12406495	A-G	Homo	INTERGENIC
SBS	Chr8	15171412	C-T	Hetero	INTERGENIC
SBS	Chr8	25011285	C-A	Hetero	INTERGENIC
SBS	Chr9	6118427	A-T	Hetero	INTERGENIC
SBS	Chr9	11528608	C-T	Hetero	INTERGENIC
SBS	Chr9	19657312	G-T	Homo	INTERGENIC
SBS	Chr10	2246402	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g017900
SBS	Chr11	24205675	C-G	Hetero	INTERGENIC
SBS	Chr11	27086835	A-G	Hetero	INTERGENIC
SBS	Chr11	29715779	C-T	Hetero	INTRON
SBS	Chr12	22481758	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g176001

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	561563	561594	31	OsKitaake12g007100
Deletion	Chr9	2832223	2832235	12
Deletion	Chr7	7776814	7776822	8
Deletion	Chr12	10610331	10610337	6
Deletion	Chr7	10878922	10878923	1
Deletion	Chr7	10946012	10946021	9
Deletion	Chr11	12948791	12948792	1
Deletion	Chr12	21185605	21185608	3
Deletion	Chr12	22481675	22481676	1
Deletion	Chr6	25871636	25871637	1
Deletion	Chr12	26004677	26004689	12
Deletion	Chr4	26133595	26133601	6
Deletion	Chr6	26392314	26392316	2
Deletion	Chr3	26898305	26898307	2
Deletion	Chr2	26957473	26957482	9
Deletion	Chr6	26964738	26964755	17
Deletion	Chr1	29238144	29238155	11
Deletion	Chr3	36238687	36238695	8	OsKitaake03g401300
Deletion	Chr1	38672223	38672234	11	OsKitaake01g413200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6312670	7000429	OsKitaake07g079200
Inversion	Chr7	6765504	7000435	OsKitaake07g079200
Inversion	Chr4	28809782	29170505	OsKitaake04g221400
Inversion	Chr4	29097955	29162131	OsKitaake04g219900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes